Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2o08
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   0.99 
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   5.3  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   9.2  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 350 SIYHCDRSFSNISNTIHSISFLNA 279
           S++    +FSNI++ IH ISF NA
Sbjct: 800 SLFRWSATFSNIADGIHRISFNNA 823


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 398 KGENKNP*IHVDIYDLSIYHCDRSFSNISNTIHSI 294
           K ENK      D     IYHC++S    +N++ ++
Sbjct: 804 KDENKKDQSGTDKLMKKIYHCEQSLKEKTNSLETL 838


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 413 ISKYYKGENKNP*IHVDIYDLSIYHCDRSFSNISNTIHSISFLNAFFSSVS 261
           + KYYK +N      + + +     CDR  S I NT+  +  ++   SS++
Sbjct: 258 VQKYYKAKNT-----ITVIEKLQGDCDRQGSIIVNTMFDVRRIDNLVSSIA 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,574
Number of Sequences: 5004
Number of extensions: 34266
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)