Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2o08
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31479| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.60028e...    29   3.1  
SB_1381| Best HMM Match : TP2 (HMM E-Value=5.2)                        29   3.1  
SB_22325| Best HMM Match : Nucleoplasmin (HMM E-Value=5.8)             28   4.1  

>SB_31479| Best HMM Match : Peptidase_M13_N (HMM
           E-Value=1.60028e-42)
          Length = 627

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 46  KICKNSKPRSYLKYEYFKTFLCFYCG 123
           K  KN KP   +KY+   T  CFY G
Sbjct: 51  KALKNDKPAEVVKYDICDTDECFYLG 76


>SB_1381| Best HMM Match : TP2 (HMM E-Value=5.2)
          Length = 428

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 46  KICKNSKPRSYLKYEYFKTFLCFYCG 123
           K  KN KP   +KY+   T  CFY G
Sbjct: 322 KALKNDKPAEVVKYDICDTDECFYLG 347


>SB_22325| Best HMM Match : Nucleoplasmin (HMM E-Value=5.8)
          Length = 282

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 166 YFCWSGCTT*HQRHCHNKNKEKF*NIHILNN 74
           +FCW G  T H  + +N N     N + +NN
Sbjct: 117 FFCWHGICTKHNNNNNNNNNNNNNNNNNINN 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,010,149
Number of Sequences: 59808
Number of extensions: 234687
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)