Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2o08
         (529 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    24   2.7  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    23   4.8  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   8.4  

>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 235 YSQRCFQFLETEEKKALRKEIE*MVLDILLKDRSQ 339
           YSQ        EEK++LR+E E   L  L K RS+
Sbjct: 49  YSQPSSDLSLDEEKESLRREKERQALGQLEKARSK 83


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 371  HVDIYDLSIYHCDRSFSNISNTIHSISFLNAFFS 270
            + D Y+ S Y  DRSF+ I N      +   FFS
Sbjct: 1604 YFDYYNASFYGSDRSFA-IQNYPIESEYARYFFS 1636


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 8.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 356 DLSIYHCDRSFSNISN 309
           + S+Y CDRS S  S+
Sbjct: 129 NFSVYRCDRSLSGSSS 144


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,591
Number of Sequences: 2352
Number of extensions: 8846
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48628785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)