Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2o06
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 105 7e-24
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 87 2e-18
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 71 1e-13
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa... 50 3e-07
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 30 0.33
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 28 1.8
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 26 5.4
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 26 5.4
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 26 7.1
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 26 7.1
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 105 bits (252), Expect = 7e-24
Identities = 63/203 (31%), Positives = 110/203 (54%), Gaps = 4/203 (1%)
Frame = +3
Query: 96 ASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDP-- 269
+ A++F+ + KCF++++P V K E ++ ++ ++ T+ I + V+V +
Sbjct: 17 SQAVHFYFDGSKPKCFLKDMPKGMMVTGIVKAEQWNNEANKWV-TSNNIKIRVQVDETFA 75
Query: 270 NDRILLSRVYSLEGMISFTSSTPGEHVICMYSNST-SWFSGSQLRVHLDIQVGEHAVDYA 446
N+ ++ + FT++ G H IC S S +WFS ++ R+H+D+ + Y
Sbjct: 76 NNHLIYKNDLRSNEAVRFTTTNEGTHRICYLSTSDGAWFSSTKTRLHVDLASDDK---YN 132
Query: 447 NVAQKE-KLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTG 623
+A E + +L R+ L ++ I EQ QR RE FR TSES N RV+ W+++Q
Sbjct: 133 LIASSEDEAKDLTDRVAALNTRLESILGEQMLQRSREMTFRDTSESANSRVVRWTIVQIV 192
Query: 624 VLVIIGYWQMRHLKSFFEAKKLV 692
VL++ WQ+ HL+ FF +KLV
Sbjct: 193 VLLVTCIWQLSHLQRFFVKEKLV 215
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 87.4 bits (207), Expect = 2e-18
Identities = 56/188 (29%), Positives = 95/188 (50%)
Frame = +3
Query: 129 ERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSRVYSLE 308
+R+CF E + ++ + V Y+ + GG + + + +P +I+ V +
Sbjct: 30 QRECFYENLRNNDQMSVTYQTNV-----GGDQLVS------MSIYNPAGQIMHQEVPNSM 78
Query: 309 GMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLR 488
SFT PG+++ C Y+++ G V ++ H V Y + + L +
Sbjct: 79 AQYSFTVKNPGKYMYCFYNDA---LDGESKEVLFNV----HGVIYISDEDLDANNPLLGK 131
Query: 489 IRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKS 668
+RQL D + ++ EQ Y RE R T+ESTN RV WWS+LQT +LV + +Q+ +LK
Sbjct: 132 VRQLHDTISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLKR 191
Query: 669 FFEAKKLV 692
FE K++V
Sbjct: 192 LFEVKRVV 199
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 71.3 bits (167), Expect = 1e-13
Identities = 62/217 (28%), Positives = 96/217 (44%), Gaps = 6/217 (2%)
Frame = +3
Query: 60 SSLLVIALLADCASALYFHI---AEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQT 230
SSL + L AL F I E C E + + VIVN K G M
Sbjct: 7 SSLFFMLALLTVVHALNFDIPAKTNPEPFCLREYVGEKNLVIVNLKTT-------GNMGD 59
Query: 231 TPGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLR--- 401
+ M + N + V E ++F IC + T S+ +
Sbjct: 60 GQTLSMMITDSSGNTHSSIQNVLG-EKSVAFDVDASAMLDICFLNTLTPGAIESEHKKRS 118
Query: 402 VHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSES 581
V L+ VG A DY+++ + L ++ IR+ D + +I + Y + RE RFR T+ES
Sbjct: 119 VKLEFTVGADADDYSSLQKANNLEPVEADIRRARDFIEEIKGKIYYLQAREARFRNTNES 178
Query: 582 TNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 692
TN+RV ++ L L ++ WQ+ +L+SFF+ K L+
Sbjct: 179 TNERVKNFAYLTFISLFVLVIWQILYLRSFFQRKHLI 215
>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 50.4 bits (115), Expect = 3e-07
Identities = 50/217 (23%), Positives = 100/217 (46%), Gaps = 5/217 (2%)
Frame = +3
Query: 42 MELIKLSSLLVIALLADCASA--LYFHIAEGERKCF-IEEIPDDTTVIVNYKVELYDPKS 212
M +I LS + + LLA ASA L F + E++C+ ++ Y V+ S
Sbjct: 1 MRVITLSGITLF-LLASLASAIELTFKLENQEKQCYYLDSFHTGEKTHFTYAVQ-----S 54
Query: 213 GGFMQTTPGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGS 392
GG + ++ P+ + + + + FT GE+ C + N S F+
Sbjct: 55 GG------SFDVDYMIKAPSQKTVALGKKRRQADVFFTLEEKGEYEFC-FDNHMSTFTDK 107
Query: 393 --QLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFR 566
+ + ++ ++ A+ + A+ K +Q + ++ + +I + Q Y + RE R
Sbjct: 108 IVTMEITMENELSLPALT-RDEAKDYKKDSMQSTVLEISTALSEIDRVQNYFKTREHRNY 166
Query: 567 QTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFE 677
T +ST R+ W+SL ++ ++V + Q+ +K+FF+
Sbjct: 167 STVKSTQARIFWFSLAESIMVVALSALQVFIVKTFFK 203
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.3 bits (65), Expect = 0.33
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 502 WIKYTRSQRSRLTRGKEKSVFDKHQKAQTSECSGGVCYRQ 621
W+ + S+R L + ++++V K ++ Q CS VC R+
Sbjct: 266 WLSLSESERRSLVKVEKEAVLQKMKEQQKYSCSCSVCGRK 305
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 138 CFIEEIPDDTTVI-VNYKVELYDPKSGGFMQTTPGIGMHV 254
C++ ++ DDT ++ +NY + Y PK Q GI + V
Sbjct: 49 CYMFKLMDDTGIVELNYSLSKYSPKFEMLRQLQLGISVFV 88
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 144 IEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSR 293
I + DD T+I+ +++ P G+ ++PGI + +PN I+ R
Sbjct: 157 IASVGDDCTLII-WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER 205
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 575 RKHKPASALVEFATDRCPCHHRLLADETSQEL 670
RKH+ + +V DR C H L E +++L
Sbjct: 716 RKHQADACIVRVMKDRKVCEHNQLMAEVTRQL 747
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 147 EEIPDDTTVIVNYKVELYDPKSGGF 221
+++ DD NYKV L KSGGF
Sbjct: 820 QQLIDDFHTNENYKVFLLSTKSGGF 844
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 334 VLDVNEIIPSNE*TRDNSILSFGSRTS 254
V D+ EI+PS T NS+ GS T+
Sbjct: 533 VTDIKEILPSQHDTPHNSVKLTGSSTT 559
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,470
Number of Sequences: 5004
Number of extensions: 60439
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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