Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2o04
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766...    27   7.6  

>12_02_0381 +
           18376045-18376114,18376270-18376420,18376524-18376681,
           18378680-18378945,18379025-18379243,18379309-18379417,
           18379488-18379603,18379935-18380033,18381447-18381556,
           18382928-18383006,18383127-18383273,18383363-18383443,
           18383529-18383648,18383902-18384024,18384276-18384353,
           18384459-18384547,18384653-18384761,18385018-18385086,
           18385200-18385310,18385657-18385712,18385808-18385985,
           18386065-18386166,18386243-18386314,18386489-18386554,
           18386674-18386739,18386853-18386936,18387080-18387196,
           18388077-18388163,18389321-18389341
          Length = 1050

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 429 VYYGDNVNAILYLHTKFIIMTRRI*KKKQQPFCLILPRV 313
           V Y D  + + Y+H + ++  R + K K+  FCL L ++
Sbjct: 752 VRYPDVPSFLEYVHNRQVVHFRSLEKPKEDDFCLELSKL 790


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,972,787
Number of Sequences: 37544
Number of extensions: 179157
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)