Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2o04
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81101-3|CAB03198.1|  127|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z69904-3|CAA93780.1|  372|Caenorhabditis elegans Hypothetical pr...    31   0.55 
AF098995-3|AAC67483.1|  276|Caenorhabditis elegans F-box b prote...    27   5.1  
Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AC006627-9|AAK85464.1|  367|Caenorhabditis elegans Hypothetical ...    27   6.8  
AF039049-2|AAB94252.2|  297|Caenorhabditis elegans Serpentine re...    27   9.0  

>Z81101-3|CAB03198.1|  127|Caenorhabditis elegans Hypothetical
           protein K09G1.2 protein.
          Length = 127

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 294 WKYTIWNKFQFVKKLHSRRRMFLDFKIKDYPIMLLCRETPNHLR 163
           W   I+     V+ LHS   +  D  +K Y I++ C   PNH +
Sbjct: 32  WAALIFVLMIVVRFLHSAFEILSDIFVKVYRILIFCYRKPNHAK 75


>Z69904-3|CAA93780.1|  372|Caenorhabditis elegans Hypothetical
           protein ZK20.3 protein.
          Length = 372

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 147 CTFRTEVAYLENFKKIVLYFRLINMYSEFIKIKNKTYSFFFQGLNPTN 4
           C F+T   +L  F  ++L+F+++ ++  FI  +    S  F+ L   N
Sbjct: 16  CAFKTPSHFLFCFLPLILFFKMVFLFCSFINNQMMVLSVTFRTLTQVN 63


>AF098995-3|AAC67483.1|  276|Caenorhabditis elegans F-box b protein
           protein 17 protein.
          Length = 276

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 21/88 (23%), Positives = 45/88 (51%)
 Frame = -1

Query: 267 QFVKKLHSRRRMFLDFKIKDYPIMLLCRETPNHLRLNN*YCTFRTEVAYLENFKKIVLYF 88
           +  K L+ R+ +  D +I++  ++ L   TPN+LRL+N Y     E   ++NF+ + L  
Sbjct: 140 ELFKGLNVRKLVNHDSRIENRQLLKLF-PTPNYLRLSNDYI---CESILVQNFETLELLE 195

Query: 87  RLINMYSEFIKIKNKTYSFFFQGLNPTN 4
           + +++ ++ +          +Q L+  N
Sbjct: 196 KKLSL-NDILTTNCTNLEIHYQSLSDRN 222


>Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.10 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -1

Query: 186 RETPNHLRLNN*YCTFRTEVAYLENFKKIVLYFRLINMYSEFIKIKNKTYS 34
           ++ P +L +   YC F  ++ Y      + +YF L  + ++FI IKN  +S
Sbjct: 34  KKIPVNLHMMLTYCRFGVDLVYTVVILILKIYFLLTQISTDFI-IKNVHFS 83


>AC006627-9|AAK85464.1|  367|Caenorhabditis elegans Hypothetical
           protein E01A2.7 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 373 NDKTNLKEKTAAILFNFTARSFSAFAVEIYNLEQI 269
           N  +++K K    L++ T RS+ A  + + NLE +
Sbjct: 72  NSASDVKWKGQIFLYDLTKRSYKAEPIPVLNLEDV 106


>AF039049-2|AAB94252.2|  297|Caenorhabditis elegans Serpentine
           receptor, class x protein67 protein.
          Length = 297

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 336 FCLILPRVASVPSPWKYTIWNKFQFVKKL 250
           FC+ + R  +V  P KY IW   +  KK+
Sbjct: 95  FCISINRFCAVLVPLKYDIWFTIKNTKKI 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,812,005
Number of Sequences: 27780
Number of extensions: 196892
Number of successful extensions: 403
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)