Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2o04
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 379 YNNDKTNLKEKTAAILFNFTARSFSAFAVEIY 284
           Y N KTN  E +   +     R FS + ++IY
Sbjct: 218 YCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 249


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 379 YNNDKTNLKEKTAAILFNFTARSFSAFAVEIY 284
           Y N KTN  E +   +     R FS + ++IY
Sbjct: 218 YCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 249


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 204 PIMLLCRETPNH 169
           PI++  RETPN+
Sbjct: 199 PILVRARETPNY 210


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 384 LCVNIILRSHYHRN 425
           L  NI+LR HY  N
Sbjct: 233 LSYNILLRRHYSMN 246


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 299 EGTEATRGKIKQNGCCFF 352
           +GT  T   +K NG C +
Sbjct: 121 DGTYPTNVVVKNNGTCLY 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,512
Number of Sequences: 438
Number of extensions: 2699
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)