Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2n24
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262...    30   2.0  
05_01_0100 + 670297-670525,671344-671559,671653-671758,671890-67...    29   4.5  

>11_06_0120 -
           20324794-20325204,20325416-20325545,20326172-20326255,
           20326584-20326823,20327418-20327498,20327761-20328113
          Length = 432

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/53 (28%), Positives = 32/53 (60%)
 Frame = +2

Query: 257 KLIQCLQDLKEVNYTDRINARKSDAKAENALNFIYQAGLKQTSFTDEEKKSLG 415
           ++I  L++++ V+Y + I  +K     E   + + +AG K+  +T+E++K LG
Sbjct: 141 EIIVRLKNVEPVSYCE-IRTKKDKDDNEGGNSVLIEAGSKEEVYTEEDEKLLG 192


>05_01_0100 +
           670297-670525,671344-671559,671653-671758,671890-672229,
           672555-672839,672911-673033,673361-673435
          Length = 457

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +2

Query: 470 CVYRTRLDNSVLMKRS--AVQYLIDDFGSFPLENSIL--TKVLDEANIGVSV 613
           C++   +      +R     ++L+DD   FPL NS++   +++D   + + V
Sbjct: 389 CIFSAEIGRQAASERQWEVYRFLLDDSSEFPLSNSLVNRNRIVDRKELAICV 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,609,594
Number of Sequences: 37544
Number of extensions: 248147
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)