Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2n17
(536 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 95 6e-21
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 57 1e-09
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 49 5e-07
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 47 2e-06
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 44 1e-05
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 44 2e-05
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 32 0.047
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 31 0.083
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 31 0.11
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 29 0.58
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 27 1.3
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 1.8
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 27 2.3
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 3.1
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 26 4.1
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr... 25 5.4
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 25 9.5
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 9.5
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 25 9.5
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 95.1 bits (226), Expect = 6e-21
Identities = 40/76 (52%), Positives = 62/76 (81%)
Frame = +2
Query: 77 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 256
MSKA P+LKK++D+++ ++LN R V GVLRG+D F+N+VL++S+EE DG++ +G V
Sbjct: 1 MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60
Query: 257 VIRGNSIIMLESLDRL 304
IRGNS+IM+E+LD++
Sbjct: 61 AIRGNSVIMIETLDKM 76
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 57.2 bits (132), Expect = 1e-09
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Frame = +2
Query: 98 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD-------GQRNNVGMV 256
+L ++ D+++ GR +TG+L+GFD MNLVLD+ E+ ++ G +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 257 VIRGNSIIMLESLD 298
V+RG +++++ +D
Sbjct: 87 VVRGTTLVLIAPMD 100
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 48.8 bits (111), Expect = 5e-07
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 101 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV-GMVVIRGNSI 277
L K + KK+ I+L++G G+L D +MNL L E EE +G++ NV G IRGN++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 278 IMLESLD 298
+ + +LD
Sbjct: 68 LYVSALD 74
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 47.2 bits (107), Expect = 2e-06
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +2
Query: 101 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC-KDGQRNNV--GMVVIRGN 271
L ++D+K+ + L G+ + G+LR FD F NL+L ++E D ++ G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 272 SIIMLESLD 298
++++L LD
Sbjct: 76 NVVLLGELD 84
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 44.0 bits (99), Expect = 1e-05
Identities = 15/45 (33%), Positives = 33/45 (73%)
Frame = +2
Query: 161 GVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESL 295
G +RGFD FMN+VLD++V+ + +G ++++G++I +++++
Sbjct: 40 GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQAI 84
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +2
Query: 101 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----KDGQRNNVGMVVIRG 268
L FM++++ + N GR V G L+GFD NL+L +S E +D + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 269 NSIIML 286
++ M+
Sbjct: 63 ENVAMV 68
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 32.3 bits (70), Expect = 0.047
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Frame = +2
Query: 98 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV---------- 247
++ ++ L++ GR G L FD FMNLVL + +E + ++ NV
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSD-CQEYRHIKKQNVPSNSVYEEKR 63
Query: 248 --GMVVIRGNSIIML 286
G+V++RG I+ L
Sbjct: 64 MLGLVILRGEFIVSL 78
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 31.5 bits (68), Expect = 0.083
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 119 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSIIMLESL 295
+ + ++L G G L D +MNL L E + DG + + IRGN+I L
Sbjct: 13 RPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQ 72
Query: 296 DRL 304
D +
Sbjct: 73 DEV 75
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 31.1 bits (67), Expect = 0.11
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 101 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSI 277
+ K + L + + + R G L GFD ++N+VL + E + G +++ GN +
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGM 70
Query: 278 IML 286
ML
Sbjct: 71 CML 73
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 28.7 bits (61), Expect = 0.58
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 86 AHPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 217
A P +L + +D+ + +KL R + G L +D +N+VL ++ E
Sbjct: 8 AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +2
Query: 104 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD 205
K +D +++++L ++ G+L+ D F+N+ L+
Sbjct: 8 KTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLE 41
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 198 TKFMNGSKPRNTPVTARPAFSFIDNFLSMNF 106
T+ GSKP NT V A S ++ ++MNF
Sbjct: 919 TQLNTGSKPVNTNVEALTTISSMNQAVNMNF 949
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 300 DFSRLRVGK-KYHQCCKCASLFINK*I*NS 386
D + R GK K +QC C+ FIN+ I NS
Sbjct: 351 DLWKKRHGKRKVYQCSNCSQTFINEDIQNS 380
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 292 RFQHYNTVTTNYHHPNIVTL 233
R Q T+ HHPNI+TL
Sbjct: 67 RLQREVTILRQLHHPNIITL 86
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 355 EAHLQHW*YFLPTLSLLK--SV*RFQHYNTV 269
++H HW Y LPT + LK SV R +Y+ V
Sbjct: 247 DSHNSHWWYNLPTEARLKGLSVGRTTNYSVV 277
>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
3|||Manual
Length = 184
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 285 WNL*TDFSRLRVGKKYHQCCKCASLFI 365
WNL TD L H C KC SLFI
Sbjct: 39 WNLETDPKTL-----LHGCSKCGSLFI 60
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 95 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 220
PEL K +D + + G G + F+PFM L L ESV++
Sbjct: 195 PELTKLVDFCKNHESTTGHFTIGDEKKFNPFMCLGL-ESVQK 235
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 259 YHHPNIVTLTVFTLLD*FIKN*IHEWIKTAQHTGNSAT 146
Y+ P + VF L+ F+ +H W K + GN+AT
Sbjct: 185 YYAP--IVFYVFNLMGFFLAA-LHPWTKVVRGDGNAAT 219
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 124 FFVHEFFQFWWMCF*HCNVLFKIL 53
FF+ F F +C C VLF IL
Sbjct: 88 FFIRYLFTFGALCILGCLVLFPIL 111
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 9.5
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = +3
Query: 42 IPYYNILKSTLQCQKHIH 95
+P YN ++ +C+ H+H
Sbjct: 4 LPIYNFIRKLPKCEHHVH 21
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,031
Number of Sequences: 5004
Number of extensions: 36142
Number of successful extensions: 116
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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