Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2n14
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   2.2  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   2.9  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   3.8  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   3.8  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   6.6  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    26   6.6  

>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 712 SCDNYDRHPRSYRLGCCTRVTSC 644
           +C++Y +  R +R  CC RV  C
Sbjct: 328 ACEHYKKSFRWFRFSCCDRVYPC 350


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +3

Query: 186 STTINVHRRLCSIRTLQCVPILPTTYAM*RPQILPFVPKTGTSPIRAPRIVPVT 347
           +T+ N  RR+ SI +L      P  + +  P +    P   +SP+    + P T
Sbjct: 356 NTSFNSQRRMSSITSLPTASFCPVKHGVSPPSLAGNQPSPLSSPLTNSNVSPST 409


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +2

Query: 44  LVFCCVWQVQAAVNCTETGAGRFADDDDTTCQNYTLCVYDTTTLDYLFYNYQCPSTSVFN 223
           LV CC+ Q      C E     F+D    TC +   C+  +  + +   +Y C S+ + +
Sbjct: 309 LVTCCICQSNYHYACVEAPFAPFSDIHYWTCNS---CIPSSLKILWKEVDYHCISSFLQS 365

Query: 224 PN 229
            N
Sbjct: 366 SN 367


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 599  YIRIVRMFRLRPAHNNSKFDK*CP*CLRIFRPRNK*KF 486
            +++ +R  R+R   NNSKFDK         RPR K +F
Sbjct: 1202 FVQRIRGGRIRHLLNNSKFDKQMEALPERLRPRVKQRF 1239


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 344 YIECVGINGTFTETTYTCPDNTFYDP 421
           YI+   +   FTE    C DN  Y+P
Sbjct: 728 YIQAACLMNQFTEVERICRDNNVYNP 753


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 311 IADPSSTNCSSYIECVGINGTFTETTYTCPDN 406
           I DPSS+  S       I+G+  +T YTCP N
Sbjct: 167 IFDPSSSEKSD-----SISGSLFDTNYTCPVN 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,971
Number of Sequences: 5004
Number of extensions: 59468
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)