Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2n14
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    29   3.0  
02_01_0482 + 3466314-3467411                                           28   9.2  

>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 240 VPILPTTYAM*RPQILPF-VPKTGTSPIRAPRIVPVTSNA*E*MVHSQKPPT 392
           +P  P  Y M RP   P  +P  G  P++ P I+P    A   +  + +PPT
Sbjct: 154 MPRYPGPYPMMRPGFPPRPMPPVGVMPLQRPPIIPGIRGAPPVVPPTARPPT 205


>02_01_0482 + 3466314-3467411
          Length = 365

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 145 VVLTSRVIVIGKSACSSLRTVDGCLNLPNATENEY*NYASLSFHFCLL 2
           V+  S   V+  SACS    VD  +++ N+ ENEY     +  + C++
Sbjct: 209 VLPDSTTFVVVLSACSHAGLVDEGISIFNSMENEYKVTPDIKHYGCMV 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,432,480
Number of Sequences: 37544
Number of extensions: 380166
Number of successful extensions: 971
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)