Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2n14
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical...    31   1.2  
Z81125-5|CAB03381.2|  398|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.7 protein.
          Length = 474

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 449 CNSTRKGSCLDRKKYYPDKCRWF 381
           CN  RKG C+D KK   +  +WF
Sbjct: 256 CNIFRKGECIDEKKERQNMIQWF 278


>Z81125-5|CAB03381.2|  398|Caenorhabditis elegans Hypothetical
           protein T22A3.3a protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
 Frame = -2

Query: 374 MYHLFLRIRCNWNNSWSSDXXXXXXXXXXXXXRSS-HCIRSWQDRY-TLQCSD*TQTSMD 201
           ++ +F R+   W N+W +D              SS  C  S+Q  Y T+Q S  T  S  
Sbjct: 16  LHCIFPRLPQAWENTWENDNFPTLVIFDELSNYSSVPCSFSFQKNYLTIQSSRETMCSTF 75

Query: 200 IDSCRTNNLKS*YRRRKACSFDKSCHR-HRQICLLQSPYS*RLP 72
           I   R NN     +     ++ KS H   +Q+  L+S     +P
Sbjct: 76  ILPPRRNNCN---KSSSTIAYSKSQHEAPKQLLQLRSEIKPLIP 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,347,777
Number of Sequences: 27780
Number of extensions: 357439
Number of successful extensions: 1002
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)