Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2n13
(519 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.5
DQ091184-1|AAZ42364.1| 157|Apis mellifera lipophorin receptor p... 21 7.6
DQ091183-1|AAZ42363.1| 128|Apis mellifera lipophorin receptor p... 21 7.6
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 21 7.6
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 144 NILVHCAXNSSMAPAPXGKPPTEGSKQXL 230
N++V C SSMA PP G K L
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTL 228
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 144 NILVHCAXNSSMAPAPXGKPPTEGSKQXL 230
N++V C SSMA PP G K L
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTL 228
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 144 NILVHCAXNSSMAPAPXGKPPTEGSKQXL 230
N++V C SSMA PP G K L
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTL 228
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 144 NILVHCAXNSSMAPAPXGKPPTEGSKQXL 230
N++V C SSMA PP G K L
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTL 228
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 144 NILVHCAXNSSMAPAPXGKPPTEGSKQXL 230
N++V C SSMA PP G K L
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTL 228
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 144 NILVHCAXNSSMAPAPXGKPPTEGSKQXL 230
N++V C SSMA PP G K L
Sbjct: 200 NLIVPCVLISSMALLGFTLPPDSGEKLTL 228
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 144 NILVHCAXNSSMAPAPXGKPPTEGSKQXL 230
N++V C SSMA PP G K L
Sbjct: 268 NLIVPCVLISSMALLGFTLPPDSGEKLTL 296
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 144 NILVHCAXNSSMAPAPXGKPPTEGSKQXL 230
N++V C SSMA PP G K L
Sbjct: 268 NLIVPCVLISSMALLGFTLPPDSGEKLTL 296
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 2.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 144 NILVHCAXNSSMAPAPXGKPPTEGSKQXL 230
N++V C +SMA PP G K L
Sbjct: 237 NLIVPCVLIASMAVLGFTLPPDSGEKLSL 265
>DQ091184-1|AAZ42364.1| 157|Apis mellifera lipophorin receptor
protein.
Length = 157
Score = 21.0 bits (42), Expect = 7.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 510 MRVLQYPGXVRPFHP 466
+R L+YP V +HP
Sbjct: 12 LRALKYPMVVHVYHP 26
>DQ091183-1|AAZ42363.1| 128|Apis mellifera lipophorin receptor
protein.
Length = 128
Score = 21.0 bits (42), Expect = 7.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 510 MRVLQYPGXVRPFHP 466
+R L+YP V +HP
Sbjct: 12 LRALKYPMVVHVYHP 26
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 21.0 bits (42), Expect = 7.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 498 QYPGXVRPFHPPCSXLN 448
Q P V+ FHP C+ N
Sbjct: 144 QVPYTVKNFHPRCAVNN 160
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,689
Number of Sequences: 438
Number of extensions: 2337
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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