Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2n11
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...   240   2e-64
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    30   0.36 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   3.3  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.3  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   4.4  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    26   5.8  

>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score =  240 bits (587), Expect = 2e-64
 Identities = 114/205 (55%), Positives = 149/205 (72%)
 Frame = +3

Query: 66  MKGCIFNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGTFLANEPS 245
           M    FN ++GY+E L RG++  +L+Q  Y NL QCE+LED +L L  TDYG FLAN+ S
Sbjct: 1   MDALSFNTNSGYIEALVRGYESALLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQ-S 59

Query: 246 PLSVSTIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILLITGTLHQRPIS 425
            L+ S I  K  EKL+ EF  +R  + E LS F+D+ITY+YMIDNI+LL+TGT++ +   
Sbjct: 60  KLTSSIISAKATEKLLDEFDLIRRQADETLSKFMDYITYAYMIDNIMLLLTGTVNGQDTH 119

Query: 426 ELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRN 605
           +L+ +CHPLG FE + A+ VA    ELY+ VL++TPLAP+F DC+S  DLDE +IEIIRN
Sbjct: 120 DLLERCHPLGWFETLPALCVATNVEELYSVVLIETPLAPYFKDCLSADDLDEQHIEIIRN 179

Query: 606 TLYKAYLEAFYDFCKQIGGTTADVM 680
           TLYKAYLE FY+FCK+IG  TAD M
Sbjct: 180 TLYKAYLEDFYNFCKKIGACTADTM 204


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 608  SVPDNLNIHFIQVLFANAIHKEWRQWCVHQHSIVKF 501
            SV D LN +F   LF  + +K W  W +    +V +
Sbjct: 1628 SVRDILNCYFYATLFDKSWYKAWHSWALANFEVVGY 1663


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
 Frame = +3

Query: 216  YGTFLANEPSPLSVSTIDDKLREKLVIE-FQHLRNHSVEPL---STFLDFITYSYMIDNI 383
            +G  L +  SP++ S  DD++   LV + F+     SV  L        ++T  Y   +I
Sbjct: 1581 FGRLLPSLDSPVTKSITDDRVEPLLVKDTFREFAEASVSGLLSCDESFHYLTQLYYTADI 1640

Query: 384  ILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAA---TPAELYNAVLVD-TPLAPFFV 551
            +  +   L QR  + L+ KC     FE  +   +        +++ ++ VD   L  F  
Sbjct: 1641 VRNLWILLSQR--NSLL-KCMESVEFEAFDYEQLKGFEHLVIQIWKSLRVDGAGLINF-- 1695

Query: 552  DCISEQDLDEMNIEIIRNTLYKAYLEAF 635
            DC +E DL+  ++     TLYK  LE F
Sbjct: 1696 DCCTEDDLNNPHLLF---TLYK-LLERF 1719


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 477 IHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFC 647
           I+   + + L N  L  T   PF     S Q+  ++  +++RN L+K    +F+  C
Sbjct: 178 INPTTSKSPLLNKKLSSTSQEPFRTSRRSGQESGDVTTKMLRNLLHKRLWISFFFAC 234


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
 Frame = +3

Query: 288  LVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILL--ITGTLHQRPISELIPKCHPLGSF 461
            L +E   LR   VE ++      +    I N   L  ++    Q P S+L+    PL SF
Sbjct: 835  LYVESLQLRKLWVEKINVAKKRHSQKINIKNPFALKVVSDVAFQYPPSDLVNGNEPLNSF 894

Query: 462  EQM---------EAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLY 614
             ++          A++  A    + +  L+  P+A   + CI++ +  E ++ ++  T  
Sbjct: 895  NEITLVEGSSIDRALNEVAWKHPIVSEELLPEPIAYGDISCIAQFNDYEGHVSVLIATST 954

Query: 615  KAYLEAFYD 641
              +L AF D
Sbjct: 955  GIFLGAFGD 963


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 216 YGTFLANEPSPLSVSTIDDKLREKLVIE 299
           Y T++AN+    S +T+D  LR  L ++
Sbjct: 374 YSTWIANKHKTASSATVDSPLRRSLSVD 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,070
Number of Sequences: 5004
Number of extensions: 64131
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)