Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2n11
         (684 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    29   0.10 
AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    23   6.8  
AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    23   9.0  
AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin b...    23   9.0  

>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 29.5 bits (63), Expect = 0.10
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 464 ADGSYSCSCNTS*TLQCCVGGHTIGAILC 550
           ADG Y+ SC +      C G H IG I C
Sbjct: 418 ADGHYAKSCTSEIKCAACNGPHRIGHISC 446


>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 488 CNTS*TLQCCVGGHTIGAILCG 553
           C        C G H IGA  CG
Sbjct: 501 CTNEVKCMLCGGAHRIGAAACG 522


>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 543 FFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKQIGGTTADV 677
           F+VDC S ++L + N+ + ++      L  F    K  G ++  V
Sbjct: 436 FYVDCKSSKNLYDSNLPVSKSYQLMKALSFFSSNYKNPGDSSEGV 480


>AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 568

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 543 FFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKQIGGTTADV 677
           F+VDC S ++L + N+ + ++      L  F    K  G ++  V
Sbjct: 444 FYVDCKSSKNLYDSNLPVSKSYQLMKALSFFSSNYKNPGDSSEGV 488


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 753,127
Number of Sequences: 2352
Number of extensions: 15781
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)