Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2n05
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.40 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   0.92 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.6  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 269 KQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSD 388
           K K  + +L+    K  A H+EQ+ R +  +RR  EQ+++
Sbjct: 92  KAKRFIKSLEERERKH-AVHKEQLSREQRFLRRRLEQLTN 130


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 517 RENKSRRVYLKQYKFYILLCFVGIF 443
           R +  R  Y+K    Y+++CFV +F
Sbjct: 292 RSSLPRISYVKAIDIYLVMCFVFVF 316


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
          RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 24 KILNNLEKSQRILIQFKH 77
          K  NNL  S +++ ++KH
Sbjct: 28 KSANNLAHSMKVIYEWKH 45


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 302  HLNKEIAFHQEQIKRHEDAI 361
            ++NK    H+ Q+K  +D I
Sbjct: 1682 NVNKHCTIHRTQVKETDDKI 1701


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,489
Number of Sequences: 438
Number of extensions: 2436
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)