Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2n04
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    43   5e-05
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    27   2.0  
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    27   2.7  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   3.5  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   6.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   6.2  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    25   8.2  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    25   8.2  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 14/183 (7%)
 Frame = +3

Query: 150 LGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILT 329
           +GL  MG  +  N   KGFTV  Y+ +   ++    N      SI            +  
Sbjct: 12  IGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLAN-EAKGKSIVGAHSLEEFVSKLKK 70

Query: 330 SNKVVLDVYLGK------DGVVAHAKKGSLLIDSSTID-PNVPKQIFPIALEKGLGFTDA 488
               +L V  GK      +G+    +KG +++D      P+  ++   +A +KG+ F  +
Sbjct: 71  PRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCEELA-KKGILFVGS 129

Query: 489 PVSGGVMGAXNATLAFMAGGRKEDFERSLPLLKVMGAKQFH---C----GQIGSGQVAKL 647
            VSGG  GA     + M GG    + R  P+ + + AK  +   C    G+ G+G   K+
Sbjct: 130 GVSGGEEGARYGP-SLMPGGNPAAWPRIKPIFQTLAAKAGNNEPCCDWVGEQGAGHYVKM 188

Query: 648 TNN 656
            +N
Sbjct: 189 VHN 191


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 120 SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAA 254
           +S T+ NVA +G GN+GG +   +  KGF          + N  A
Sbjct: 3   ASRTNVNVAIVGTGNIGGELLNQI--KGFNENASTNGTTSFNVVA 45


>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 589 TLRRGRDLSKSSLRPPAMKARVAX*APMTPPDTGASVNPSPFSRA 455
           T+R+GR  S SS  PP          P + P+TGAS +  PF+ +
Sbjct: 110 TMRQGRFPSSSSEFPPKNSKYQL---PGSMPNTGASSSQDPFTNS 151


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 616 PQWNCLAPITLRRGRDLSKSSLRPPAMK 533
           PQ +C   ++L    DLSKSSL  P  K
Sbjct: 383 PQASCTEAVSLTADIDLSKSSLATPRPK 410


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 109 DGRIVLTPTRMWLSSASETWEGSWLRTWLK 198
           +G+I+L   ++WL       E  W   WL+
Sbjct: 105 NGKILLIRPKIWLCDDGNFRESRWFTPWLR 134


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 568 LSKSSLRPPAMKARVAX*APMTPPDTGASVN 476
           L+ SS+ PPA  A  +     TP + G S+N
Sbjct: 248 LAFSSIEPPASSASTSPRNTPTPSNNGTSIN 278


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 346 STCTWAKMALWLMRKKDRF*SIRV 417
           S   W+ M+ WL++KKD+    R+
Sbjct: 34  SAIYWSCMSFWLLKKKDQIDKERI 57


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 318 KRPRRLHQRLQQWSWLASLRSWPL 247
           K+ +  H+R++  +WL+SL SW L
Sbjct: 186 KQTQETHERIR--NWLSSLNSWQL 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,035
Number of Sequences: 5004
Number of extensions: 71019
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)