Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2n03
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    30   0.30 
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    26   4.9  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   4.9  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    26   6.5  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    25   8.6  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    25   8.6  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   8.6  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 380 GFNDTVITMNYSWIVVSSLLCSVAYGSNLTFPPGFKFGAASASYQVEGAWNVSDKGESIW 559
           G +D ++ +N       S + S  +G++L+F        AS+S  +E     SDK  SIW
Sbjct: 277 GTSDNIVFLNNMGGSAGSGVWSSCFGNSLSFAASNGVDGASSSQVLENILVASDKEFSIW 336


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 434 LLCSVAYGSNLTFPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIMD 598
           LL  +  G N    P  K G+ SAS++ + AW++  K  S   R   T  E   D
Sbjct: 496 LLQELISGINQKQKPSHKRGSLSASHKRDAAWSLLYKATSNKSRPTTTSTELKTD 550


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 386 NDTVITMNYSWIVVSSLLCSVAYGSNLTFPP 478
           ND++I   +  +  S+L CS+ Y  +  F P
Sbjct: 424 NDSIIVQLFQGMYKSTLECSICYQKSTAFDP 454


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 377 GGFNDTVITMNYSWIVVSSLLCSVAYGSNLTF 472
           G FN   I+ + +W++V S +CS+  G  L +
Sbjct: 205 GRFNLVPISADETWLIVESEVCSLYSGEALHY 236


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 603 VRSIIASGLVWTSRSHMLSPLSLTFQAPS-TWYEAD 499
           +  +I++G  W++ S +   ++  F+APS   YEAD
Sbjct: 74  IMGVISTGFAWSAYSLVKKYIAPMFRAPSQNAYEAD 109


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/37 (24%), Positives = 23/37 (62%)
 Frame = +3

Query: 264 LPEYFFCVNKWSGDSVQWRFCTESLVQNIISIVYVII 374
           + E+   +++W   + +WR  T+  ++N+++IV  I+
Sbjct: 204 MDEWRKSMDEWRKSTDEWRKSTDERLENLLNIVREIL 240


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 406 HCYHCIVEASGIITYTMLIIFC 341
           H Y+ +VE  G++T    IIFC
Sbjct: 338 HKYNVLVELYGLLTIGQSIIFC 359


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 584 EAIM-DLTNGDVTCDSYHLWERDIEMATELGLHFYRFSLSWPRLM 715
           EAIM DL   D+  D     E D+ +A     HF+ FS  +PR +
Sbjct: 299 EAIMSDLNFEDI--DEKKFEEIDLRLACCFESHFFAFSQHYPRYL 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,044
Number of Sequences: 5004
Number of extensions: 49751
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)