Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2n03
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...    80   2e-15
U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...    73   3e-13

>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 33/85 (38%), Positives = 56/85 (65%)
 Frame = +2

Query: 470 FPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIMDLTNGDVTCDSYHLWERD 649
           FP  FK   A+A+YQ+EGA +++ +G S WD  +  +P  I+D ++ D++CD    ++ D
Sbjct: 7   FPKNFKLATATAAYQIEGAKDLNGRGFSTWDA-IRLEPGRILDNSDPDLSCDGLLKYKED 65

Query: 650 IEMATELGLHFYRFSLSWPRLMPTG 724
           + +  E+G+  YRFS+SW R++P G
Sbjct: 66  VALLAEIGVTNYRFSISWSRILPDG 90


>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 30/85 (35%), Positives = 55/85 (64%)
 Frame = +2

Query: 470 FPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIMDLTNGDVTCDSYHLWERD 649
           FP  F+   A+A+YQ+EGA N+  +G S WD  + ++   I D ++ D++C+    ++ D
Sbjct: 7   FPKNFQLATATAAYQIEGAKNLDGRGFSTWDS-IRSENGRIHDNSDPDLSCEGRLKYKED 65

Query: 650 IEMATELGLHFYRFSLSWPRLMPTG 724
           + + +++G+  YRFS+SW R++P G
Sbjct: 66  VALLSKIGVTSYRFSISWSRILPDG 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,902,833
Number of Sequences: 27780
Number of extensions: 278118
Number of successful extensions: 640
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)