Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2n01
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 30 2.4
03_05_0720 + 27114301-27114548,27114647-27114926,27115104-271151... 30 2.4
04_04_0735 - 27667780-27667887,27668116-27668211,27668346-276684... 29 3.2
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198... 29 4.2
07_01_0600 - 4462337-4462774 29 4.2
10_08_0328 - 16805296-16806121,16806493-16807274 29 5.6
04_03_0521 + 16765347-16767324,16769202-16769392 28 7.4
01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712... 28 7.4
11_01_0099 - 728644-728805,728915-729141,729427-729585,729683-72... 28 9.7
08_02_1055 + 23986258-23986459,23986734-23986825,23987389-239874... 28 9.7
>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = -1
Query: 481 RSYLTVR--IDKRFFVRIESREVEAVDGTMEHLPDAVTCHTQILCRFRCVIKCIYPILST 308
R+ L V+ ++ F RI R E V T+ L + V C+++I + +C PI+
Sbjct: 1089 RNLLAVKKDLEPEFSCRIIQRIHENVPETVVALDERVECNSKIAVALSLMDECFLPIVDQ 1148
Query: 307 EVH-NVFASII--C-SSYTRIDARNF 242
N+ +++ C S++ R+D F
Sbjct: 1149 RTGINLIRNVVYNCGSNFVRMDFHGF 1174
>03_05_0720 +
27114301-27114548,27114647-27114926,27115104-27115154,
27115679-27116000,27116610-27116718,27116754-27116802
Length = 352
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -2
Query: 777 LPSAAKATPQIDS---PSCTLMTRSNVPASSFM*KISFGVEKYNLPLMSLANPLTIKVSK 607
+PSA + PQ +S P C TR +V ++ F E+ + + S+ANPL V
Sbjct: 1 MPSAVSSPPQRESILRPYCVPWTRGSVATAAVAKAAPFRGEQNHKQVASVANPL---VKH 57
Query: 606 CILYKTPS 583
C+ + S
Sbjct: 58 CVRLRLSS 65
>04_04_0735 -
27667780-27667887,27668116-27668211,27668346-27668455,
27668545-27668648,27669279-27669556
Length = 231
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Frame = -1
Query: 520 SNQSCFDVGEFRYRSYLTVRIDKRFFVRIESREVEAVDGTMEHL----PD---AVTCHTQ 362
S + + E + Y +R D RF VR++ +++ V +EHL PD V
Sbjct: 145 STGNALALSELNLKFYTPLRKDDRFVVRMKVVKIKGVRIIVEHLIETLPDRKLVVDAKAT 204
Query: 361 ILC---RFRCVIKCIYPILSTEVHNVFAS 284
+C ++R ++P LST++H F S
Sbjct: 205 AVCLDNKYRPTR--VFPELSTKLHQFFLS 231
>08_01_0238 -
1988688-1988830,1988989-1989257,1989339-1989600,
1989693-1989805,1990560-1990594,1990771-1990878,
1992178-1992483
Length = 411
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 325 YPILSTEVHNVFASIICSSYTRI 257
YP+ T +H VF+S++C + T+I
Sbjct: 114 YPVALTLLHMVFSSVVCFAITKI 136
>07_01_0600 - 4462337-4462774
Length = 145
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 67 CFRSRKPRSGSTKR*CAQSIPTRSRLPNQHTVL 165
CF S PRS + S P RLP +HT++
Sbjct: 33 CFSSMPPRSRAVDAAYCYSAPVHLRLPVRHTII 65
>10_08_0328 - 16805296-16806121,16806493-16807274
Length = 535
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 242 EISGINSGIATAYDRSKHVVYLGGQDGIYTFDYTTKSAKNL 364
+ SG S + T+Y+ S H VYL G F T + K L
Sbjct: 407 DFSGEISALGTSYNCSLHSVYLAGNGFTGVFPSTLEGCKTL 447
>04_03_0521 + 16765347-16767324,16769202-16769392
Length = 722
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/77 (23%), Positives = 29/77 (37%)
Frame = +2
Query: 407 VHGLYFTTFNPDEKAFVYSYGQVGPVPELTDIKTRLIAVGQKHDIYFANSAGIFVLKTID 586
+H L+ + K S GP P++ T L D A+ IF L
Sbjct: 195 IHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTK 254
Query: 587 GVLYKIHLETFIVNGFA 637
G+ H+ ++N +A
Sbjct: 255 GIAPNKHVFNILINAYA 271
>01_01_0906 -
7124686-7124730,7124854-7124925,7125257-7125383,
7125424-7125572,7126126-7126465,7126759-7127090,
7127327-7127860
Length = 532
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 551 NSAGIFVLKTIDGVLYKIHLETFIVNGFASDINGKLYFSTPNDIFYINED 700
+ A + +K + LY+ L T+ A D NGK+ S D FYI ED
Sbjct: 447 DEATLRAMKNLSQYLYRSILMTYKHKMHAVDNNGKIVSSADFD-FYIKED 495
>11_01_0099 -
728644-728805,728915-729141,729427-729585,729683-729772,
729783-729849
Length = 234
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 379 VTCHTQILCRFRCVIKCI-YPILSTEVHNV 293
+T H ++ RF+C I CI + L TE+ V
Sbjct: 1 MTIHVLVITRFQCPISCILHDCLGTEIATV 30
>08_02_1055 +
23986258-23986459,23986734-23986825,23987389-23987412,
23987932-23988068,23988533-23988692,23988997-23989006,
23989449-23989726,23990059-23990136
Length = 326
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +2
Query: 218 NLNTKEFGEISGINSGIATAYDRSKHVVYLGGQDGIYTFDYTTKSAKNLRVTSYSIWQMF 397
N+ ++ +G T D V+Y G G+ T V S+SIW +F
Sbjct: 104 NMKHRDIRRFAGTVPNATTTGDIDSMVMYAGQGVGLITEIIPASEV----VKSWSIWHVF 159
Query: 398 HCP 406
CP
Sbjct: 160 FCP 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,435,705
Number of Sequences: 37544
Number of extensions: 428233
Number of successful extensions: 1026
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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