Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2n01
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine rece...    29   5.0  
AF047657-4|AAK18948.3|  330|Caenorhabditis elegans Serpentine re...    28   6.6  

>U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine
           receptor, class h protein76, isoform b protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 702 ASSFM*KISFGVEKYNLPLMSLAN-PLTIKVSKCILYKTPSIVFST 568
           ++SFM    F V  Y L L ++ N PL +    CIL KTP  + ST
Sbjct: 22  STSFMSSTDFIV--YPLQLSTILNIPLFVLAGYCILQKTPKSIGST 65


>AF047657-4|AAK18948.3|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein240 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
 Frame = -2

Query: 648 LMSLANPLTIKVSKCILYKTPS-------IVFSTNIPAELAKYISCF 529
           L ++  P+ +  S CI++KTP+       ++F+T+I + L+ ++ CF
Sbjct: 24  LTAIQVPVFVFGSYCIIFKTPNHMLTVKWLLFNTHIWSSLSDFVICF 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,577,490
Number of Sequences: 27780
Number of extensions: 419346
Number of successful extensions: 1170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)