Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2m24
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1032 + 10447474-10448030,10448784-10449813 34 0.11
07_03_0093 + 13330867-13332312 30 1.8
07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392... 29 5.4
03_05_1047 + 29935929-29935974,29948868-29949709,29950162-29950350 29 5.4
06_01_0429 - 3056302-3056570,3056681-3056951,3057055-3057206,305... 28 7.1
05_07_0234 - 28566846-28567766 28 7.1
01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724 28 7.1
09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004 28 9.4
05_06_0163 - 26082276-26082369,26082751-26082814,26082899-260829... 28 9.4
05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705 28 9.4
>08_01_1032 + 10447474-10448030,10448784-10449813
Length = 528
Score = 34.3 bits (75), Expect = 0.11
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = -1
Query: 301 DPCSKLHTSRKCLSLSIHSAPSRVLWLVSRAE----CIWCLRRKRTAPAWSLRGGSQSCA 134
D + + + LSL + S PS L SR + +W LRR A A +LR G + CA
Sbjct: 68 DASTAASSPKHALSLLLSSPPSPGLPPASRRDLLVRALWELRRDPDAAALALRWGEEGCA 127
Query: 133 EACAR----PASAPSTQIW 89
A R P P + W
Sbjct: 128 AAGERAGPPPPPPPPAEAW 146
>07_03_0093 + 13330867-13332312
Length = 481
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = -1
Query: 307 PLDPCSKLHTSRKCLSLSIHSAPSRVLWLVSRAECIWCLRRKRTAPAWSLRGGSQSCAEA 128
P S L L+ HS P+ V+ + C+W +R T P W LR A+
Sbjct: 269 PASRLSWLGRHNLLLAAGSHSGPAGVVGDI----CLWDVRASATVPVWELREKEDCFADI 324
Query: 127 CARPA 113
A A
Sbjct: 325 AASEA 329
>07_03_1562 -
27738369-27738568,27738767-27738962,27739079-27739230,
27739775-27739832,27739923-27740038,27740117-27740237,
27740348-27740635,27740817-27740987,27741091-27741741,
27742515-27742676,27742764-27743904,27743992-27744152,
27744239-27744564,27745678-27745825
Length = 1296
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 719 GIFL*H-GSEAYHVKTFLTGDIGRLGSKSLTHVPAETSA 606
G+ + H G E+Y ++ L G +G+L +K+ V ++ A
Sbjct: 330 GVLIPHFGGESYKIRNSLVGVLGKLAAKAFKDVEGDSDA 368
>03_05_1047 + 29935929-29935974,29948868-29949709,29950162-29950350
Length = 358
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 313 SFIDNARRSAEIYGLEIEN-MTAEDIKKRWNGIQ 411
+F+D AR ++G E+ A+D++K W G+Q
Sbjct: 83 TFLDTARHRRVLWGWANESDSAADDVRKGWAGVQ 116
>06_01_0429 -
3056302-3056570,3056681-3056951,3057055-3057206,
3057419-3057631,3057791-3057959
Length = 357
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 763 GNRKRNPAPSLPKNLVYFCNTGPKRTTSKLFSQAI 659
GN + PAP + N +Y + G TS L SQ+I
Sbjct: 125 GNNDQLPAPDVLHNALYTIDIGQNDLTSNLGSQSI 159
>05_07_0234 - 28566846-28567766
Length = 306
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 93 IWVEGADAGRAHASAQLWEPPRSDQAGAVRLRRR 194
+W GA AG A ASA P +S G++ RR
Sbjct: 156 LWTPGAGAGSASASASPRPPRKSGSTGSMARWRR 189
>01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724
Length = 271
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 39 DHCGQRIRWFVCRLLRLQIWVEGADAGRAHASAQL 143
DH G+ +F+ RL RLQ+W E A G S ++
Sbjct: 119 DHLGRS--FFLSRLFRLQVWSEHAGQGELIESVRV 151
>09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004
Length = 258
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +3
Query: 105 GADAGRAHASAQLWEPPRSDQAGAVRLRRRHQ 200
GA G HA A R + GAVRLRRR Q
Sbjct: 125 GAGGGWRHAGAGGRRRHRRARRGAVRLRRRRQ 156
>05_06_0163 -
26082276-26082369,26082751-26082814,26082899-26082972,
26083644-26083759,26084644-26084909,26085002-26085092
Length = 234
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = -1
Query: 259 LSIHSAPSRVLWLVSRAECIWCLRR 185
+S++++ +V+++ S A +WC+RR
Sbjct: 56 ISLYNSVMKVVFITSSAAIVWCMRR 80
>05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705
Length = 265
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 39 DHCGQRIRWFVCRLLRLQIWVEGADAG 119
DH G+ +F+ RL RLQ+W E A G
Sbjct: 113 DHLGRS--FFLSRLFRLQVWSEHAGQG 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,281,255
Number of Sequences: 37544
Number of extensions: 419538
Number of successful extensions: 1264
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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