Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2m19
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    32   0.092
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.0  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   8.0  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 381 ALQNTGLLYRKYRAPIAKLTPVHNFHGLQGNDSPDFELFPRVFNCDIYR 235
           +L+   L + KY A +AK  PV  FHGL G+   ++    + F+C + R
Sbjct: 2   SLKPVKLAFEKYSATVAKHPPVLIFHGLLGS-KRNWRSLAKKFSCKLDR 49


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 425 EDTAKFDWEKLLNYLKPHKWLLIAAVGSALAVAFLNVYIPA 547
           ED+ + +WE   + L P  W +   + + L  +F+ + I A
Sbjct: 83  EDSYQVEWESGKDPLAPKNWPMWKKIYTLLVASFIAIVITA 123


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 425 EDTAKFDWEKLLNYLKPHKWLLIAAVGSALAVA 523
           +D++ FD +   NYLK   WL  ++V S   VA
Sbjct: 286 DDSSSFD-DDYQNYLKQEPWLAHSSVNSLKDVA 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,928
Number of Sequences: 5004
Number of extensions: 57127
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)