Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2m19
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899...    30   2.1  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    29   3.6  
08_01_0991 + 10030636-10031064,10031209-10031364,10031443-100315...    29   3.6  
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806...    29   3.6  
12_02_1053 + 25704123-25704313,25704378-25704812,25705760-257059...    28   6.3  

>05_06_0102 -
           25589011-25589181,25589269-25589496,25589589-25589933,
           25590406-25590777,25590957-25591049,25591150-25591401,
           25592019-25593224
          Length = 888

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 323 VSLAIGARYFLYRSPVFCKAVQTSRVIQRRPNFQEDTAKFDWEKLLNYL 469
           +++A+G    ++RSP F K      +++  P F      FDW    ++L
Sbjct: 109 IAVAVGKLVQIWRSPAFRKEFFPFHLLRTIPGFAAGVTAFDWSPDSSFL 157


>11_06_0542 +
           24777453-24777632,24777654-24778478,24778576-24779319,
           24779422-24780354,24780456-24780938,24780969-24781082,
           24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 206 VKNKPSDALNRYISQLKTRGKSSKSGESLP 295
           ++N  SD L R++  + T G+SS S  SLP
Sbjct: 220 LENFCSDELTRWVKSVGTMGRSSSSSPSLP 249


>08_01_0991 +
           10030636-10031064,10031209-10031364,10031443-10031554,
           10031710-10031876,10031962-10032848,10032927-10032987,
           10033009-10033097,10033180-10033468,10033520-10033564
          Length = 744

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
 Frame = +2

Query: 257 TRGKSSKSGESLPCSPWKLCT--GVSLAIGARYFLYRSPVFCKAVQTSRV------IQRR 412
           +R +++++G  +P   +++     V L  G R  L R    C  +   +       I++ 
Sbjct: 16  SRARTTRTGNKIPKERFRITVVNQVGLPTGPRKILSRFRSICGVIGGQKFSILQDDIKQV 75

Query: 413 PNFQEDTAKFDWEKLLNYLKPHKWLL 490
           P  ++D+A   ++K  NY   HK+L+
Sbjct: 76  PAAEKDSAWLAFKKSFNYPAEHKYLI 101


>01_06_0158 -
           27079262-27079346,27079662-27079750,27080540-27080659,
           27080738-27080894,27081167-27081231,27081323-27081436,
           27082109-27082178,27082412-27082642,27082963-27083039,
           27083143-27083237,27084514-27084574,27084678-27085073
          Length = 519

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 197 TNIVKNKPSDALNRYISQLKTRGKSSKSGESLPCSPWKLCTGVSLAIGARYFLYR 361
           T + +N+  D + +YI QL  R  S     S+ CS       ++  IG   F+ +
Sbjct: 405 TQLAQNQTQDLVLQYIDQLCDRLPSPMGESSVDCSSLASMPDIAFTIGGNKFVLK 459


>12_02_1053 +
           25704123-25704313,25704378-25704812,25705760-25705913,
           25706143-25706229
          Length = 288

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 533 VYIPAMLGVIVNVLAGIRNNPAADFIDEIKMP 628
           VY+P   G +V     + NN AAD I  +  P
Sbjct: 229 VYVPLSGGTVVTQAEDVNNNSAADLIASLTTP 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,448,168
Number of Sequences: 37544
Number of extensions: 316634
Number of successful extensions: 735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)