Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2m19
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-7|AAK29911.3|  668|Caenorhabditis elegans Half transpor...    60   1e-09
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    33   0.15 
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    33   0.15 
Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z78017-1|CAE17958.1|  183|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z73971-11|CAE17752.1|  183|Caenorhabditis elegans Hypothetical p...    27   9.9  

>AC025721-7|AAK29911.3|  668|Caenorhabditis elegans Half transporter
           (pgp related)protein 6 protein.
          Length = 668

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
 Frame = +2

Query: 305 WKLCTGVSLAIGARYFLYRSPVFCKAVQTSRVIQRRPNFQEDTAKFDWEKLLNYLKPHKW 484
           W++C G    +GA   +      C A + S+ I      ++  A     +L N +KP   
Sbjct: 42  WRIC-GFGAGLGA---VTLRKAAC-APKLSKRIDHLRTTEDQNASMTAGELWNLIKPFFG 96

Query: 485 LLIAAVGSALAVAFLNVYIPAMLGVIVNVLAGI---RNNPAADFIDEIKMPAFKLISLYV 655
              AAV  A+  A++N+ IP  LG +VN +  I    +N      +++K  A  L++LYV
Sbjct: 97  WFFAAVVCAILSAYINIQIPLCLGDLVNGIVKIIKDESNNLRSHFEQLKPSALHLMTLYV 156

Query: 656 GQAAFTFFYIHLLSQVG 706
            Q+A TF YI  L+ +G
Sbjct: 157 AQSALTFLYITFLTVLG 173


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
            translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = +2

Query: 269  SSKSGESLPCSPWKLCTGVSLAIGARYFLYRSPVFCKAVQTSRVIQRRPNFQEDTAKFDW 448
            S+K GE + C   +  TG +  +  R+F +  P++ +  + S  I ++  F+ED  K DW
Sbjct: 1004 SAKQGEEV-CIKIENTTGEAPRLYGRHFTHEDPLYSRVTRESIDICKK-YFREDLTKADW 1061

Query: 449  EKLLNYLK 472
            + ++   K
Sbjct: 1062 QLVVQLKK 1069


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
            protein Y54F10BM.2 protein.
          Length = 1173

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = +2

Query: 269  SSKSGESLPCSPWKLCTGVSLAIGARYFLYRSPVFCKAVQTSRVIQRRPNFQEDTAKFDW 448
            S+K GE + C   +  TG +  +  R+F +  P++ +  + S  I ++  F+ED  K DW
Sbjct: 1103 SAKQGEEV-CIKIENTTGEAPRLYGRHFTHEDPLYSRVTRESIDICKK-YFREDLTKADW 1160

Query: 449  EKLLNYLK 472
            + ++   K
Sbjct: 1161 QLVVQLKK 1168


>Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical
           protein F57B1.9a protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/64 (28%), Positives = 35/64 (54%)
 Frame = +2

Query: 512 LAVAFLNVYIPAMLGVIVNVLAGIRNNPAADFIDEIKMPAFKLISLYVGQAAFTFFYIHL 691
           L +  L+++I ++L +++NV A + +    DF   +K  AF LIS  +    +T  + +L
Sbjct: 89  LCMLTLSIFIISILNLLINVPATLFSLLTKDF---VKSEAFLLISYIIDICHYTILFCNL 145

Query: 692 LSQV 703
           +  V
Sbjct: 146 VIAV 149


>Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical
           protein F01G10.5 protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -2

Query: 378 LQNTGLLYRKYRAPIAKLTPVHNFHGLQGNDSPDFELFPRVFNCDIYRFKASDGLFFTIL 199
           LQ T      Y AP   ++ + +    QG       +  R+ +CDI  FK+SD +F+ +L
Sbjct: 12  LQLTNYFAENYPAPCDLISSLTDLWFKQGG------MIARMMSCDIQEFKSSD-VFYEVL 64

Query: 198 VK 193
            +
Sbjct: 65  YR 66


>Z78017-1|CAE17958.1|  183|Caenorhabditis elegans Hypothetical
           protein C50H2.13 protein.
          Length = 183

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 413 PNFQEDTAKFDWEKLLNYLKPHKWLLIAAVGSALAVAFLNVYI 541
           P+ +  T+K    K+L YLK HK  LIA      AV    V +
Sbjct: 132 PHERNITSKKPPNKVLEYLKGHKHTLIAWTFGIFAVTLCTVVV 174


>Z73971-11|CAE17752.1|  183|Caenorhabditis elegans Hypothetical
           protein C50H2.13 protein.
          Length = 183

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 413 PNFQEDTAKFDWEKLLNYLKPHKWLLIAAVGSALAVAFLNVYI 541
           P+ +  T+K    K+L YLK HK  LIA      AV    V +
Sbjct: 132 PHERNITSKKPPNKVLEYLKGHKHTLIAWTFGIFAVTLCTVVV 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,156,950
Number of Sequences: 27780
Number of extensions: 308015
Number of successful extensions: 905
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)