Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2m19
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          26   0.40 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      26   0.40 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.53 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 377 KAVQTSRVIQRRPNFQEDTAKFDWEKLLN 463
           K + T   ++R  N    TA+FDW K +N
Sbjct: 266 KQLMTRYFLERMSNDLGKTAEFDWNKPIN 294


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 377 KAVQTSRVIQRRPNFQEDTAKFDWEKLLN 463
           K + T   ++R  N    TA+FDW K +N
Sbjct: 266 KQLMTRYFLERMSNDLGKTAEFDWNKPIN 294


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 493 SCCWFCVSCGIPKCVHPSY 549
           +CCW C  C   + VH  Y
Sbjct: 465 TCCWVCDQCEEYEYVHDEY 483


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 481 MAPYSCCWFCVSC 519
           +A   CCW C +C
Sbjct: 600 VAGEQCCWHCFNC 612


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 493 SCCWFCVSCGIPKCVHPSY 549
           +CCW C  C   + V+  Y
Sbjct: 555 TCCWVCDQCEEYEYVYDEY 573


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -2

Query: 594 GLFLIPARTFTMTPSIAGMYTFRNAT-ANAEPT 499
           GLFL       M P + G +  R+    +A PT
Sbjct: 300 GLFLFACTNSCMNPIVYGAFNIRDRNKTSARPT 332


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 128 MLQNHLFCLTRQRFLASKSNKYFTNIVKNKPSDA 229
           +LQN  FC   +  +  K  K  T+ +K++  +A
Sbjct: 480 ILQNACFCARNELMMILKEIKIITDQLKSEELNA 513


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 410 RPNFQEDTAKFDWEKLLNYLKPHK 481
           RP+  E+  +F  ++ + Y  PHK
Sbjct: 588 RPSTVEEREEFRRQERMRYAAPHK 611


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,259
Number of Sequences: 438
Number of extensions: 3868
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)