Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2m18
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0239 + 1744353-1746365                                           29   3.9  
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686...    28   9.1  
01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232           28   9.1  

>07_01_0239 + 1744353-1746365
          Length = 670

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 544 LSPYHNLPKTDANRVTPKFSLDSSSTIYV--HSYVYIVAYFC 425
           LS  HNL K   + +   FS  SS+ +Y+  H++ + +A FC
Sbjct: 206 LSATHNLSKLLLDHMYVGFSSSSSAALYISGHAHGHFIAGFC 247


>08_02_0592 +
           19064025-19066596,19067036-19067084,19068530-19068605,
           19068767-19068922
          Length = 950

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 403 NTGFLESYKNMPRCIHNYVRISLKTNREKTSASLDLRQFSVNCGMVISFIKD-CCNYRNV 579
           + G LE Y N+P C+  + +   +   +++   +  R+F   C  ++  ++      R +
Sbjct: 672 HNGKLELYLNVPSCVERHRQHGSENGNDRSKIRMLCRRFQFICNALLHAVEQGSLMVRRI 731

Query: 580 NLSMTIVIDK 609
           +L    +I K
Sbjct: 732 DLEADKIIRK 741


>01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232
          Length = 549

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 134 KAEVPPMCPKSKLPLLHLTPSGGQKKIEGATPQSKS 241
           K  +P  C  S++ L HL       KIE ATP+ +S
Sbjct: 324 KRGIPSDCSDSQIMLWHLDMPRHTPKIEQATPEKES 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,995,775
Number of Sequences: 37544
Number of extensions: 351955
Number of successful extensions: 904
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)