Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2m17
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    28   0.96 
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    26   3.9  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   6.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   6.8  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.8  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    25   6.8  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   9.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.0  

>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 22/97 (22%), Positives = 39/97 (40%)
 Frame = +2

Query: 80  PLRDISPALQAFRNFLLGRKHTNALRFEPLVSARTQPPPEIPDGPSHKHAHNYYYTRDAR 259
           P ++I P+   F   +        LR E   +  + PP + P+ P+   +++  Y  +  
Sbjct: 50  PSQEIPPSDNVFDYIVFRGSDVKDLRIEEPATTPSAPPVQPPNDPAIIGSNSGQYNWNQA 109

Query: 260 REVAPPIDVTKELLSASSDKGAPKQAANVRPTPGHLY 370
           +   PP  V        +  GAP Q A     P ++Y
Sbjct: 110 QTAQPPQPV------QPNPYGAPYQQAPPAGAPYYMY 140


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 171 FRLGPSLLQKSQTDPRTSM 227
           + +GP LLQ+ + DP TS+
Sbjct: 621 YTVGPELLQRKKRDPNTSI 639


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 141 IQTLFVLSHWFRLGPSLLQKSQTDPRTSMPTTTITQET 254
           + +  + S W  LG +   K QT P  S+  ++ T ET
Sbjct: 408 LNSTVIQSKWDSLGHTASPKMQTQPVRSVSQSSATTET 445


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +2

Query: 218 HKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAPKQAANVRPT 355
           H H+H+  + R+  +E     +  K   +   D+G P Q A    T
Sbjct: 724 HGHSHSKSHDREKEKEKKKDREHRKHRETEEEDEGPPPQPARPEST 769


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 234 LWACLCEGPSGISGGG 187
           LW  LC    GI GGG
Sbjct: 179 LWLVLCRAVQGIGGGG 194


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 234 LWACLCEGPSGISGGG 187
           LW  LC    GI GGG
Sbjct: 179 LWLVLCRAVQGIGGGG 194


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 230 HNYYYTRDARREVAPPIDVTKEL-LSASSDK 319
           HNY++       V   + +TKEL LS S D+
Sbjct: 903 HNYFFAEAHASSVTGVLSITKELLLSVSIDQ 933


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 188 PPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVT 289
           PPP  P  P+     + YY    + E  P ID T
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDET 808


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,194
Number of Sequences: 5004
Number of extensions: 39272
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)