Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2m13
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.20 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.8  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          24   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 677 LVMSYSVGPAAVASFPPVLVVPSTGMGY 760
           L +SY     A   +PPV+  PSTGM Y
Sbjct: 831 LPVSYMSTTMAGVIYPPVIGTPSTGMMY 858


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 408 VCVLDIVYTRLTLIRAAGRLRDG 476
           +C+L +  T +TL+RA     DG
Sbjct: 36  LCILTLALTLVTLVRAEDIFEDG 58


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 408 VCVLDIVYTRLTLIRAAGRLRDG 476
           +C+L +  T +TL+RA     DG
Sbjct: 36  LCILTLALTLVTLVRAEDIFEDG 58


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 408 VCVLDIVYTRLTLIRAAGRLRDG 476
           +C+L +  T +TL+RA     DG
Sbjct: 36  LCILTLALTLVTLVRAEDIFEDG 58


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 408 VCVLDIVYTRLTLIRAAGRLRDG 476
           +C+L +  T +TL+RA     DG
Sbjct: 36  LCILTLALTLVTLVRAEDIFEDG 58


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 514 IHTGW*ETVNDLVPSRSLPAARISVSLVYTMSNTHTNIRV 395
           IHTG+  ++  + P+R LP      ++V  +  T T+  V
Sbjct: 84  IHTGFGGSIITIPPTRKLPPLHPHTAMVTHLPQTLTSENV 123


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 604 EW*NSRRLVPPEWKTR 651
           EW   R L P EWK R
Sbjct: 573 EWEPPRALWPTEWKVR 588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,062
Number of Sequences: 438
Number of extensions: 4537
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)