Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2m12
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    27   2.6  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    26   6.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.0  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 363 IACSVLGHPGSRAAYLRHTDEV-YSPSSR*LQIGK*TVHCQNAFYPKVRIRFLGIL 199
           I C   G+   RAA    +D + Y P S+   + +     ++  YPK+ +R L IL
Sbjct: 424 ILCDEGGYEFKRAAVDAISDMIKYIPESKERALAELCEFIEDCEYPKIAVRILSIL 479


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 192 LYKEYLEIEYVPWGRTRFDNGQF 260
           LY EY+E +   +G T+F + +F
Sbjct: 86  LYHEYIEYDLFNYGLTKFSDAEF 108


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 241  VLTMDSLLANLESTTAGRIDFIGVP*IC 324
            V T+DS +  +E T A + ++ GVP  C
Sbjct: 1640 VWTLDSDIGEIEYTNASKRNYFGVPEDC 1667


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,125
Number of Sequences: 5004
Number of extensions: 60469
Number of successful extensions: 206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)