Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2m12
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 40 0.003
03_02_0877 - 12072996-12073285,12074312-12074615,12074699-120748... 32 0.51
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 31 0.89
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 29 4.8
03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298 28 6.3
11_02_0068 + 7991816-7992603,7995209-7997177 28 8.3
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392... 28 8.3
02_04_0290 - 21627733-21628353,21628424-21628663,21628874-216292... 28 8.3
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Frame = +3
Query: 60 LVLACTYVEALQTVNGKIKISVGTTAGCSDTVNFISQQLKEAY-DLYKEYLEIEYVPWGR 236
L+LA VE + GK+ +++ + C + F+ L + + D + +++ VP+G
Sbjct: 17 LLLAAGAVEGKK--GGKVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLSLVPYGN 74
Query: 237 TRFDNGQFTCQ--FGVNDCWANRLHRCALN 320
R +G+ +CQ G +C+ N + CA++
Sbjct: 75 ARVKDGKISCQVEHGSEECFLNTVEACAID 104
>03_02_0877 -
12072996-12073285,12074312-12074615,12074699-12074871,
12075299-12075434,12076327-12076788,12076882-12077189,
12077724-12078105
Length = 684
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -1
Query: 593 PPESFVVAISINLIIKNDRRH----EINNCHWLGSGCLSSGI 480
PP+ F VA+ L+ N ++ + NN HW G+ C+ G+
Sbjct: 108 PPDDFTVALRKALMFFNAQKSGKLPKNNNVHWRGNSCMKDGL 149
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 375 PPFPSFIQGSYVCAREAGLDLVNLDHCVANVGDELD 482
PP F Q VC+ E D L+ +ANV D LD
Sbjct: 421 PPLADFNQAKNVCSLETSSDPCTLEQHLANVSDLLD 456
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = -1
Query: 473 ITNIRNTMVQIDQIQASLTRADV*ALYKRRERRSVFALHVAYLGILVPAQHI*GTPMKSI 294
+T I N + +Q++ S RA+ +KR + V L + L I +PA HI G + I
Sbjct: 755 VTEIFN--IWFEQVKKSGVRAN----FKREHDKKVCCLGLTSL-ISLPADHIPGEALNRI 807
Query: 293 RPAVVDSKLASKLSIVKTR 237
A +D +A K + +++
Sbjct: 808 FKATLDLLVAYKEQVAESK 826
>03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298
Length = 439
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 480 PTHHQHSQHNGPN*PDPSQPHARRRMSLV 394
P HH H H GP P P+ + ++ L+
Sbjct: 109 PPHHHHHHHGGPLTPPPATSSSSQQAGLL 137
>11_02_0068 + 7991816-7992603,7995209-7997177
Length = 918
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 503 SGCLSSGIQLITNIRNTMVQID 438
+G GIQ +TN+RN +Q+D
Sbjct: 852 NGSFDFGIQYLTNLRNVYIQLD 873
>05_01_0479 -
3920992-3921513,3921643-3921756,3921905-3922482,
3922709-3923067,3923132-3923205
Length = 548
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 451 WSKLTRSKPASRAQTYEPCIKDGKGGAYSHC 359
WS+LT+S AQ +PC G G ++ C
Sbjct: 155 WSQLTQSLQKVYAQPVDPCTAFGTCGPFTIC 185
>02_04_0290 -
21627733-21628353,21628424-21628663,21628874-21629214,
21630934-21631612,21631893-21631962,21632063-21632190
Length = 692
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -2
Query: 574 WRFLSISSLRTIEGTKLITAIGWXXXXXALVSNSSPTFATQW-SKLTRSKP--ASRAQTY 404
W F +S LR +++TAI L+ + +A++W LT+ P A+ + +
Sbjct: 269 WWFEDVSVLRIDHFVRVVTAIKVKGMRFDLIGAAITHYASKWLPGLTKDAPLGATHDEPW 328
Query: 403 EPCIKDGKGGAYSHCM 356
G GG H M
Sbjct: 329 AQASAAGVGGGGLHMM 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,719,762
Number of Sequences: 37544
Number of extensions: 425700
Number of successful extensions: 1112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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