Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2m12
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077534-7|AAK71376.1|  319|Caenorhabditis elegans Prion-like-(q...    56   2e-08
Z81534-4|CAB04345.1|  277|Caenorhabditis elegans Hypothetical pr...    50   1e-06
L16622-5|ABC71836.1|  263|Caenorhabditis elegans Hypothetical pr...    48   7e-06
L16622-4|AAA27914.1|  323|Caenorhabditis elegans Hypothetical pr...    48   7e-06
Z32683-12|CAA83624.2|  186|Caenorhabditis elegans Hypothetical p...    36   0.037
AF003150-5|AAB54213.1|  474|Caenorhabditis elegans Hypothetical ...    32   0.35 
Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z46240-3|CAA86312.1|  309|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z68115-1|CAA92164.1|  231|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AF077534-7|AAK71376.1|  319|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 48
           protein.
          Length = 319

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +3

Query: 111 IKISVGTTAGCSDTVNFISQQLKEAYDLYKEYLEIEYVPWGRTR-FDNGQFTCQFGVNDC 287
           IKI++   A C     FI+ QL   ++ ++  L +E VPWG +R   +G F+C  G  +C
Sbjct: 141 IKITLIYEALCPYCQKFIANQLGSVFNQFQGQLILELVPWGNSRIMRDGSFSCNHGQKEC 200

Query: 288 WANRLHRCALNMLR 329
            ANRL  C +++L+
Sbjct: 201 DANRLQSCVIDILK 214


>Z81534-4|CAB04345.1|  277|Caenorhabditis elegans Hypothetical
           protein F37H8.5 protein.
          Length = 277

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
 Frame = +3

Query: 96  TVNGKIKISVGTTAGCSDTVNFISQQLKE-AYDLYKEYLEIEYVPWGRTR-FDNGQFTCQ 269
           T N KI I+V   A C D  NF+++QL    +  +  Y+ IE VP+G  +  ++G   CQ
Sbjct: 71  THNQKINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLEDGTIKCQ 130

Query: 270 FGVNDCWANRLHRCALNMLR 329
            G  +C  N+   C ++ ++
Sbjct: 131 HGEEECSINKFEGCFIDSMQ 150


>L16622-5|ABC71836.1|  263|Caenorhabditis elegans Hypothetical
           protein C02D5.2b protein.
          Length = 263

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
 Frame = +3

Query: 93  QTVNGKIKISVGTTAGCSDTVNFISQQLKEAYDLYKEY--LEIEYVPWGRTRF----DNG 254
           + V   +K+ V   A C DT  F  QQLK+A+D+      +E+  +P+G+ R     ++ 
Sbjct: 73  EPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDF 132

Query: 255 QFTCQFGVNDCWANRLHRCALN 320
           +  CQ G  +C  N+L  C ++
Sbjct: 133 ECQCQHGPTECQINQLMNCVID 154


>L16622-4|AAA27914.1|  323|Caenorhabditis elegans Hypothetical
           protein C02D5.2a protein.
          Length = 323

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
 Frame = +3

Query: 93  QTVNGKIKISVGTTAGCSDTVNFISQQLKEAYDLYKEY--LEIEYVPWGRTRF----DNG 254
           + V   +K+ V   A C DT  F  QQLK+A+D+      +E+  +P+G+ R     ++ 
Sbjct: 133 EPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDF 192

Query: 255 QFTCQFGVNDCWANRLHRCALN 320
           +  CQ G  +C  N+L  C ++
Sbjct: 193 ECQCQHGPTECQINQLMNCVID 214


>Z32683-12|CAA83624.2|  186|Caenorhabditis elegans Hypothetical
           protein R07E5.4 protein.
          Length = 186

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
 Frame = +3

Query: 51  ILCLVLACTYVEALQTVNGKIKISVGTTAGCSDTVNFISQQLKEAYDLYKEYLEIEYVPW 230
           +L L++A  +   LQ    ++ +++ T + C      + +Q+   Y      + ++ VP+
Sbjct: 1   MLVLLVAFLFPVLLQAQ--QVNVTIFTESQCPYCTKLLREQIWPFYVNRPGIMNLQIVPF 58

Query: 231 GR--TRFD---NGQFTCQFGVNDCWANRLHRCALN 320
           G+    +D   N   TC  G  +C  NRL  CA++
Sbjct: 59  GKGDCTYDYNRNFHCTCMHGATECDLNRLQNCAIS 93


>AF003150-5|AAB54213.1|  474|Caenorhabditis elegans Hypothetical
           protein T05E7.1 protein.
          Length = 474

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 24/77 (31%), Positives = 32/77 (41%)
 Frame = +3

Query: 6   LSTRMHRAVAMSVKVILCLVLACTYVEALQTVNGKIKISVGTTAGCSDTVNFISQQLKEA 185
           LST+ H+  A  V  + C    C    A+   NGK   +     G SD VN + +Q    
Sbjct: 273 LSTKYHQVSA--VVALNCSAAFCRD-NAVMKENGKPMETQILDEGMSDFVNQVLRQKPAF 329

Query: 186 YDLYKEYLEIEYVPWGR 236
            DLY        +PW R
Sbjct: 330 RDLYSNLTPTTSIPWAR 346


>Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical
           protein K02C4.2 protein.
          Length = 201

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 291 ANRLHRCALNMLRGNQDAQVRYMQCE-YAPPFPSFIQGSYVCARE 422
           A R   C    L   ++A  R ++C+ Y PP   F +  Y+CA E
Sbjct: 125 AARQGECVFECLYPGRNACTRKLKCDLYLPPEDEFFKTFYLCAEE 169


>Z46240-3|CAA86312.1|  309|Caenorhabditis elegans Hypothetical
           protein B0272.3 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 530 EINNCHWLGSGCLSSGI-QLITNIRNTMVQIDQIQASLTRA 411
           +INN   +G+G + SGI Q+  N +  +  +D  Q++L +A
Sbjct: 21  KINNVTIIGAGLMGSGIAQVSANAKLNVTVVDSNQSALEKA 61


>Z68115-1|CAA92164.1|  231|Caenorhabditis elegans Hypothetical
           protein F19H6.2 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 436 WSIWTIVLRMLVMSWIPELKQPLPNQWQLLISCLRSFL 549
           W  +   +    + W    ++P    W+ LISC+ SF+
Sbjct: 156 WETFAECMTQAAVEWEANRQRPTLGAWRNLISCIISFM 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,392,204
Number of Sequences: 27780
Number of extensions: 346679
Number of successful extensions: 1034
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)