Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2m12
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    26   0.30 
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              26   0.40 
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   1.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.6  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 568 IATTKLSGGCPV*FASLYLTTRTMILLVVKFRSPMLIGFIKNFFN 702
           + T  ++   P+    LY    T+I L+++F+S  L+ F   FFN
Sbjct: 112 VFTYNITNSTPL-LKKLYGGNSTIIFLLIRFKSFSLLNFNLLFFN 155


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +3

Query: 408 VCAREAGLDLVNLDHCVANVGDELDTRXXXXXXXPMAVINFV-PSIVLNDEIDRNR 572
           VCA E G+DL   D     + D+ D +        +  + FV      N+E  R R
Sbjct: 32  VCAEENGIDLKKADDVKKGIFDKNDEKLACYVDCMLKKVGFVNADTTFNEEKFRER 87


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 618 KRSKSNWAAS*KLRCGDFYQ 559
           K SK +WAA  K++ GD  Q
Sbjct: 31  KESKVSWAALKKMKAGDMEQ 50


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 228 WGRTRFDNGQFTCQFGV 278
           W R R ++G FT  F +
Sbjct: 130 WARLRMNSGMFTTAFSI 146


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 228 WGRTRFDNGQFTCQFGV 278
           W R R ++G FT  F +
Sbjct: 130 WARLRMNSGMFTTAFSI 146


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 588 RRLPSLICFALLDDPNNDITS 650
           RRLP L+   + DD  ND+ +
Sbjct: 342 RRLPKLLLMRVPDDLLNDLAA 362


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 314 GTPMKSIRPAVVDSKLAS 261
           GTP+ + RPA V+   AS
Sbjct: 371 GTPISTGRPATVEDTSAS 388


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 314 GTPMKSIRPAVVDSKLAS 261
           GTP+ + RPA V+   AS
Sbjct: 371 GTPISTGRPATVEDTSAS 388


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 314 GTPMKSIRPAVVDSKLAS 261
           GTP+ + RPA V+   AS
Sbjct: 371 GTPISTGRPATVEDTSAS 388


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 314 GTPMKSIRPAVVDSKLAS 261
           GTP+ + RPA V+   AS
Sbjct: 371 GTPISTGRPATVEDTSAS 388


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 314 GTPMKSIRPAVVDSKLAS 261
           GTP+ + RPA V+   AS
Sbjct: 371 GTPISTGRPATVEDTSAS 388


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 314 GTPMKSIRPAVVDSKLAS 261
           GTP+ + RPA V+   AS
Sbjct: 371 GTPISTGRPATVEDTSAS 388


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 314 GTPMKSIRPAVVDSKLAS 261
           GTP+ + RPA V+   AS
Sbjct: 439 GTPISTGRPATVEDTSAS 456


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 314 GTPMKSIRPAVVDSKLAS 261
           GTP+ + RPA V+   AS
Sbjct: 439 GTPISTGRPATVEDTSAS 456


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 469 PTFATQWSKLTRSKPASRAQTYEPC 395
           PT +  +S    S  AS AQ   PC
Sbjct: 370 PTLSESYSSYVNSMYASGAQFATPC 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,964
Number of Sequences: 438
Number of extensions: 4771
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)