Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2m09
(203 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99288-9|CAB16551.2| 335|Caenorhabditis elegans Hypothetical pr... 29 0.45
Z82051-1|CAB04815.1| 350|Caenorhabditis elegans Hypothetical pr... 26 3.2
AF100305-2|AAC68917.1| 320|Caenorhabditis elegans Hypothetical ... 26 4.2
U41540-5|AAK39229.2| 666|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z81117-12|CAB03320.2| 345|Caenorhabditis elegans Hypothetical p... 25 9.7
Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr... 25 9.7
AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GA... 25 9.7
AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GA... 25 9.7
AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GA... 25 9.7
>Z99288-9|CAB16551.2| 335|Caenorhabditis elegans Hypothetical
protein ZK262.10 protein.
Length = 335
Score = 29.1 bits (62), Expect = 0.45
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 197 FYLH*LFSKYFINTIHSITPKIITFSNMKPKLKYNFYLHVFLLT 66
FY+ + S+ +H + I + ++ PK+ +N L VFL++
Sbjct: 162 FYMAQVISEVLSQNVHEMNILIAVYEDLSPKVTWNSRLGVFLVS 205
>Z82051-1|CAB04815.1| 350|Caenorhabditis elegans Hypothetical
protein T23D5.1 protein.
Length = 350
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -2
Query: 73 YSPIY--IIQTLTIRYIYRINIL 11
YS +Y I+ LTI+YIYR+ +L
Sbjct: 94 YSAVYAAILSFLTIQYIYRVCVL 116
>AF100305-2|AAC68917.1| 320|Caenorhabditis elegans Hypothetical
protein W04B5.5 protein.
Length = 320
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 167 FINTIHSITPKIITFSNMKPKLK-YNFYLHVFL-LTNLYHSN 48
F+ T +TP+++T S M P + F + ++L LT +Y N
Sbjct: 208 FVGTAFFVTPELLTGSEMSPSSDLWAFSVTLYLFLTGIYPFN 249
>U41540-5|AAK39229.2| 666|Caenorhabditis elegans Hypothetical
protein F35H12.4 protein.
Length = 666
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 167 FINTIHSITPKIITFSNMKPKLKYNFYLHVFLLTNLYHSNI 45
F NT+ +I N K K+ Y F+ V + Y+SNI
Sbjct: 295 FENTMFNICVNESAVLNSKDKVPYVFFAEVIRSSPNYNSNI 335
>Z81117-12|CAB03320.2| 345|Caenorhabditis elegans Hypothetical
protein T06E6.5 protein.
Length = 345
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 61 KLVSKNTCR*KLYFNLGFMLENVIIF 138
KL + N C K+YF+ ++E ++ F
Sbjct: 151 KLCNPNVCEIKVYFSTHIIMEPILSF 176
>Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical
protein C04G2.6 protein.
Length = 1029
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -1
Query: 152 HSITPKIITFSNMKPKLKYNFYLHVFLLTNLYHSNID 42
H++ P ++ F K N Y HV L Y N++
Sbjct: 172 HNVAPVVLVFDEDSKKRMENHYQHVMYLKE-YIQNLE 207
>Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical
protein T21C12.1e protein.
Length = 506
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 164 INTIHSITPKIITFSNMKPKLKYNFYLHVFL 72
+ T+ ++T I T +N PK+ Y L VFL
Sbjct: 290 VTTVLTMTTLITTTNNSMPKVSYVKGLDVFL 320
>Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical
protein T21C12.1d protein.
Length = 475
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 164 INTIHSITPKIITFSNMKPKLKYNFYLHVFL 72
+ T+ ++T I T +N PK+ Y L VFL
Sbjct: 290 VTTVLTMTTLITTTNNSMPKVSYVKGLDVFL 320
>Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1c protein.
Length = 487
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 164 INTIHSITPKIITFSNMKPKLKYNFYLHVFL 72
+ T+ ++T I T +N PK+ Y L VFL
Sbjct: 290 VTTVLTMTTLITTTNNSMPKVSYVKGLDVFL 320
>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
protein T21C12.1a protein.
Length = 1106
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 164 INTIHSITPKIITFSNMKPKLKYNFYLHVFL 72
+ T+ ++T I T +N PK+ Y L VFL
Sbjct: 564 VTTVLTMTTLITTTNNSMPKVSYVKGLDVFL 594
>AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.3 protein.
Length = 506
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 164 INTIHSITPKIITFSNMKPKLKYNFYLHVFL 72
+ T+ ++T I T +N PK+ Y L VFL
Sbjct: 290 VTTVLTMTTLITTTNNSMPKVSYVKGLDVFL 320
>AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.2 protein.
Length = 475
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 164 INTIHSITPKIITFSNMKPKLKYNFYLHVFL 72
+ T+ ++T I T +N PK+ Y L VFL
Sbjct: 290 VTTVLTMTTLITTTNNSMPKVSYVKGLDVFL 320
>AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.1 protein.
Length = 487
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 164 INTIHSITPKIITFSNMKPKLKYNFYLHVFL 72
+ T+ ++T I T +N PK+ Y L VFL
Sbjct: 290 VTTVLTMTTLITTTNNSMPKVSYVKGLDVFL 320
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,721,059
Number of Sequences: 27780
Number of extensions: 58204
Number of successful extensions: 133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 12,740,198
effective HSP length: 47
effective length of database: 11,434,538
effective search space used: 228690760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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