Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2m08
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0479 + 17627605-17627839,17628965-17629107,17630018-176301... 75 5e-14
08_02_0481 + 17636359-17636593,17638136-17638278,17638431-176385... 75 6e-14
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610 52 5e-07
06_03_0848 - 25334701-25334949,25335076-25335184,25335667-253357... 36 0.045
04_03_0797 + 19744815-19745030,19745190-19745273,19745375-197454... 33 0.18
02_02_0139 + 7122880-7122979,7123328-7123560,7123961-7124032,712... 32 0.42
03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94... 29 2.9
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152... 29 3.9
12_01_0273 - 1989058-1989349,1989730-1989837,1990315-1990508,199... 29 3.9
11_01_0272 - 2042490-2042781,2043146-2043203,2043385-2043401,204... 29 3.9
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 29 3.9
02_05_0617 + 30383334-30383579,30383592-30383681,30383772-303839... 29 5.1
04_04_1393 - 33204699-33204806,33204927-33205164,33205581-332058... 28 6.8
09_04_0388 + 17234485-17234583,17234710-17234893,17235252-172360... 28 9.0
07_01_0508 + 3786655-3787158,3787542-3787904,3788003-3788088,378... 28 9.0
>08_02_0479 +
17627605-17627839,17628965-17629107,17630018-17630137,
17630497-17630721
Length = 240
Score = 75.4 bits (177), Expect = 5e-14
Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 10/145 (6%)
Frame = +3
Query: 150 LLYTLRSSNLSNHSGQVSFPGGKMDKNE-DVYETALRETEEEIGISREHIDIWSKMPQVQ 326
+L T RSS LS+HSG+VS PGGK ++ + D TALRE +EEIG+ + + + +
Sbjct: 65 VLLTKRSSKLSSHSGEVSLPGGKAEEGDADDAATALREAKEEIGLDPASVTVVASLEHFL 124
Query: 327 GRDRNIAITPVIGLLRNYHRDNLRPNLGEVEEIFTVPMKTFC--DVNNHAHLEYDGIIIP 500
+ + + PV+G+L + N+ EV+ IF VP++ F + E+ G
Sbjct: 125 SK-HLLVVVPVVGILSDIQAFKPVLNVDEVDSIFDVPLEMFLKDEKRTSEEREWMGQEFT 183
Query: 501 V-FLN-----EKHKIWGIT-GMITH 554
+ + N EK+ IWG+T G++ H
Sbjct: 184 IHYFNYEKGSEKYVIWGLTAGILIH 208
>08_02_0481 +
17636359-17636593,17638136-17638278,17638431-17638550,
17638916-17639116
Length = 232
Score = 74.9 bits (176), Expect = 6e-14
Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 9/142 (6%)
Frame = +3
Query: 150 LLYTLRSSNLSNHSGQVSFPGGKMDKNE-DVYETALRETEEEIGISREHIDIWSKMPQVQ 326
++ T RSS+LS HSG+V+ PGGK ++ + D TALRE +EEIG+ + + + +
Sbjct: 65 VILTKRSSSLSTHSGEVALPGGKAEEGDADDAATALREAKEEIGLDPSLVTVVASLEHFL 124
Query: 327 GRDRNIAITPVIGLLRNYHRDNLRPNLGEVEEIFTVPMKTFCDVNNHAHLEYDGI----I 494
+ + + P++G+L + N+ EV++IF VP++ F N E + +
Sbjct: 125 SK-HLLVVVPIVGILSDIEAFKPVLNVDEVDDIFDVPLEMFLKDENRTSEEREKMGQTFT 183
Query: 495 IPVF----LNEKHKIWGITGMI 548
I F N+K+ IWG+T I
Sbjct: 184 IHYFNYEKENQKYLIWGLTARI 205
>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
Length = 164
Score = 52.0 bits (119), Expect = 5e-07
Identities = 24/52 (46%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Frame = +3
Query: 150 LLYTLRSSNLSNHSGQVSFPGGKMDKNE-DVYETALRETEEEIGISREHIDI 302
++ T R+++LS+HSG+VS PGGK+++ + D TALRE +EEIG+ + I
Sbjct: 83 VILTKRAASLSSHSGEVSLPGGKVEEGDADATATALREAKEEIGLDPALVSI 134
>06_03_0848 -
25334701-25334949,25335076-25335184,25335667-25335701,
25335793-25335843,25335941-25336018,25336214-25336351,
25336664-25336729,25337387-25337572
Length = 303
Score = 35.5 bits (78), Expect = 0.045
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +3
Query: 129 IENDQVCLLYTLRSSNLSNHSGQVSFPGGKMDKNEDVYETALRETEEEIGISREHIDI 302
+ ND+ +L S + G FP G ++ ED+ A+RE +EE GI E +++
Sbjct: 124 VMNDKREVLAVQEKSGVLRGLGVWKFPTGVVEPGEDINLGAVREVKEETGIDTEFVEV 181
>04_03_0797 +
19744815-19745030,19745190-19745273,19745375-19745473,
19745588-19745695,19747332-19747700
Length = 291
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 204 FPGGKMDKNEDVYETALRETEEEIGISREHIDIWS 308
FP G + +EDVYE A RE EE G+ + +I++ S
Sbjct: 70 FPKGGWEDDEDVYEAACREAMEEAGV-KGNINVMS 103
>02_02_0139 +
7122880-7122979,7123328-7123560,7123961-7124032,
7124257-7124334,7124529-7124579,7124654-7124703,
7124807-7124915,7125023-7125223
Length = 297
Score = 32.3 bits (70), Expect = 0.42
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 123 LCIENDQVCLLYTLRSSNLSNHSGQVSFPGGKMDKNEDVYETALRETEEEIGISREHID 299
LC+ + + +L S+ S P G +DK ED++ A+RE EE G S I+
Sbjct: 127 LCLSSCRARVLVVKEGKCPSHCSDIWKIPTGFIDKFEDLFSGAIREVREETGNSTFQIE 185
>03_01_0121 +
940338-940637,941023-941324,941417-941969,943889-944848
Length = 704
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 9 EVLLNAVTRSICISKLKELPIFLSKEVTYKTKASVLVPLCIENDQVC 149
E L+NA + + + PI SK + A + V LC++ + C
Sbjct: 134 EALINAKVKDVVVGMTDPNPIVASKGIERLRSAGIDVRLCVDEEASC 180
>12_01_1116 +
11914352-11914415,11915049-11915158,11915254-11915295,
11916263-11916430,11916506-11916682,11916848-11917051,
11917125-11917319
Length = 319
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 447 FCDVNNHAHLEYDGIIIPVFLNEKHKIWGITGMITHLFLSCFLPEKLYNVNFMRRKFTLD 626
+CDV N HL + G I K W + + T + + C+ E+ M FT D
Sbjct: 204 YCDVKNSKHLRWTGEYIEKRSGIKCLDWDLMKLATGIKIICYPTERSTAEEAM---FTQD 260
Query: 627 EL 632
EL
Sbjct: 261 EL 262
>12_01_0273 -
1989058-1989349,1989730-1989837,1990315-1990508,
1990601-1990717,1990801-1990966,1991323-1991490,
1991734-1993052
Length = 787
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 193 DKFLFLVVKWIKMKMFMRLL--YGKLKRKLEYLVNTSIFGVKCLK 321
DK++ +K ++K+ +R+L Y K R + + T FG+ C+K
Sbjct: 538 DKYMIKTMKKAEVKVLLRMLPAYYKHVRSFDNTLVTKFFGLHCVK 582
>11_01_0272 -
2042490-2042781,2043146-2043203,2043385-2043401,
2043572-2043765,2043858-2043974,2044059-2044224,
2044430-2044597,2044741-2046047
Length = 772
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 193 DKFLFLVVKWIKMKMFMRLL--YGKLKRKLEYLVNTSIFGVKCLK 321
DK++ +K ++K+ +R+L Y K R + + T FG+ C+K
Sbjct: 534 DKYMIKTMKKAEVKVLLRMLPAYYKHVRSFDNTLVTKFFGLHCVK 578
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -1
Query: 316 GILLQIS-MCSRDIPISSSVSRKAVS*TSSFLSILPPGKETCPL*LLKLDDLRVYNRQ 146
G+ L +S M + IP+S RKA+ T++ +S +P K T LL++D Y +Q
Sbjct: 512 GVALLVSAMKAEGIPLSPYTVRKAIENTAASISDVPEEKLTTGHGLLQVDRAFEYAQQ 569
>02_05_0617 +
30383334-30383579,30383592-30383681,30383772-30383901,
30384578-30384591
Length = 159
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 270 PLQFPVKQSHKHLHFYPF---YHQEKKLVRCDCSN*TILEYITGKLG 139
P +FP + +HL +PF +H +L C +N +++ YI LG
Sbjct: 70 PAEFPPSRRSRHLVVHPFMDVFHVTDRL-GCKLTNDSVITYIEQSLG 115
>04_04_1393 -
33204699-33204806,33204927-33205164,33205581-33205825,
33206229-33206339,33206645-33206743,33207684-33207731,
33207882-33207999,33208085-33208115,33208700-33208806,
33209644-33209725,33210010-33210104,33210579-33210664,
33211074-33211195,33211613-33211824,33212362-33212510,
33212755-33212982
Length = 692
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = -1
Query: 595 TLYNFSGKKHDKNK*VIIPVIPQILCFSFKNTGIIIPSYSKCA*LLTSQNVFIGTVNISS 416
TLYN + K+DKN+ VI+ P + F + G+ S + L+ + + N
Sbjct: 487 TLYNCTDGKNDKNRDVIV-AFPDVEPFVIQTPGLYTSSSKTYSTKLSKNYIAVDASNDEY 545
Query: 415 TSPRL 401
P L
Sbjct: 546 EHPHL 550
>09_04_0388 +
17234485-17234583,17234710-17234893,17235252-17236057,
17236148-17236432
Length = 457
Score = 27.9 bits (59), Expect = 9.0
Identities = 8/19 (42%), Positives = 17/19 (89%)
Frame = +3
Query: 543 MITHLFLSCFLPEKLYNVN 599
++T LF++C++P +LY++N
Sbjct: 87 LVTLLFVACYMPGRLYDLN 105
>07_01_0508 +
3786655-3787158,3787542-3787904,3788003-3788088,
3788164-3788217,3788838-3789020,3789716-3789737
Length = 403
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 486 GIIIPVFLNEKHKIWGITGMITHLFLSCFLPEKLYNVNFM 605
G ++ + E + T +I +FLSCF +Y+++F+
Sbjct: 221 GFLLHLHAKESKALQRFTSIIPRVFLSCFSYLVMYHISFL 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,645,852
Number of Sequences: 37544
Number of extensions: 353587
Number of successful extensions: 775
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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