Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2m03
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    42   2e-05
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    24   5.8  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    24   7.6  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 42.3 bits (95), Expect = 2e-05
 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
 Frame = +2

Query: 53  PQGTPYILIPFXXXXXXXXXXXRPGTLAVRLTANIIAGHLLITLL-----RRTGTN-ISF 214
           P GTP  LIP            R  +L +RL ANIIAGHL +++L        G N I+F
Sbjct: 155 PSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMGLNLITF 214

Query: 215 YXXXXXXXXXXXXXXXESAVAIIQSYVITIL 307
                           E  +A IQ+YV  IL
Sbjct: 215 IIGFLPITVLVAISLLEFGIAFIQAYVFAIL 245


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 97  NNYYKWY*NIGCSLWNYMNKYVI 29
           N++Y W+       WNY N +++
Sbjct: 360 NSFYDWHNGATQVKWNYKNPHIL 382


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 34  HIYSYNSTRNTLYFNTIYSNY 96
           +IYSYN  R+ L  N +   Y
Sbjct: 529 YIYSYNGERDELVLNNLRPRY 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 830,218
Number of Sequences: 5004
Number of extensions: 9820
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)