Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2m03
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical p...    27   2.7  
Z81124-6|CAB03375.1|  335|Caenorhabditis elegans Hypothetical pr...    26   6.3  

>Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical
           protein C01G10.4 protein.
          Length = 72

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 4   NY*LN*KYKSHIYSYNSTRNTLYFNTI-YSNY*NHQKYYSTW 126
           NY  N  Y ++ Y  N+  N  Y+N   Y+N   +  YY TW
Sbjct: 31  NYNNNNGYTTYYYYPNNNNNGYYYNNNGYNN--GYNTYYYTW 70


>Z81124-6|CAB03375.1|  335|Caenorhabditis elegans Hypothetical
           protein T21B4.8 protein.
          Length = 335

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 174 NKCPAIMLAVNRTAKVPGRIIFLMVSIITI 85
           N+  +I+L   +  KVP R++F+ V++I I
Sbjct: 126 NRSSSIILNRLKIDKVPSRVVFICVNVIGI 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,447,273
Number of Sequences: 27780
Number of extensions: 52647
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)