Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2l21
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81047-14|CAH04642.1|  357|Caenorhabditis elegans Hypothetical p...    29   2.3  
AL032663-8|CAD89752.1|  321|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF068716-8|AAC17749.1|  554|Caenorhabditis elegans Innexin prote...    28   7.1  
AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched relat...    28   7.1  

>Z81047-14|CAH04642.1|  357|Caenorhabditis elegans Hypothetical
           protein C41G6.16 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 101 LLMPLFIWKVMQQYEGSKPNDINTKHIV 18
           +++P F+WK++   +  K  +I+TK+IV
Sbjct: 240 IIIPFFLWKLLNGKKVDKKKNISTKYIV 267


>AL032663-8|CAD89752.1|  321|Caenorhabditis elegans Hypothetical
           protein Y75B12B.10 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 101 LLMPLFIWKVMQQYEGSKPNDINTKHIV 18
           +++P F+WK++   +  K  +I+TK+IV
Sbjct: 215 IIIPFFLWKLLNGKKVDKKKNISTKYIV 242


>AF068716-8|AAC17749.1|  554|Caenorhabditis elegans Innexin protein
           4 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -2

Query: 191 INQKKKKQVGYCKHASYKA*PKVLLVHRCVLLMPLFIWKVMQQYEGSKPNDI 36
           I++++ +Q+ Y     Y+  P  LL+   +  +P  +W++M    G + NDI
Sbjct: 126 ISEREYRQISY-----YQWVPFFLLLQAFLYYIPCLMWRLMSDKSGIRLNDI 172


>AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched related
           family protein 16 protein.
          Length = 881

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 4   NAGHITMCFVLMSLGFEPSYCC-ITFHMNNGINSTHLCTNSTLGYAL 141
           N   ITMC  LMS+GF   +   I++H     N T   T+  L  AL
Sbjct: 662 NLDPITMCTTLMSIGFSVDFTAHISYHYYR--NPTSWTTDERLADAL 706


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,017,359
Number of Sequences: 27780
Number of extensions: 226499
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)