Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2l20
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    29   0.81 
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    28   1.1  
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    26   4.3  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    26   5.7  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    25   7.5  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.9  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    25   9.9  

>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 384 YSRECSKEMLYRGRIRVQIKNDDGAPVNPEFPTRESVMKYIGESIPKLKTRQNRPVEQ 557
           + RE  +E  Y GR   + + D  +P +PE    E   ++     P  K  + RPV+Q
Sbjct: 94  HGRERFRERDYEGRRDRKERRDGVSPFSPEGEGLERKREHEKLQAPSPKEEEERPVDQ 151


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 204 KKHSDVERWICIYPAYLNSKKTLAEGRRLPKSVCV 308
           K   D   W  ++ + L S+    EG R PK++C+
Sbjct: 357 KSEEDAINWFQVFASDLRSRFLELEGMRRPKTICL 391


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 231 ICIYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVE 374
           I +YP Y +  +     R +PK   + NP  + I DV+   G +  +E
Sbjct: 4   IILYPIYFDKSRP-RRFRCVPKDKAILNPLAKNIADVVRDLGYKCKLE 50


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 596 FCLTDCLICWLRLLFHRSILSC 531
           +CLT     WL +L+ R  L+C
Sbjct: 40  YCLTTLFFTWLIILYPRPTLAC 61


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 438 IKNDDGAPVNPEFPTRESVMKY 503
           ++ND  + VN EFP RE ++ +
Sbjct: 120 LRNDKASTVNIEFPYREGIVTH 141


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 566 LRLLFHRSILSCL*LWNGFTNIFHYRFSSRKFRIY 462
           +++ F   I+S L ++NGF N   Y F    + +Y
Sbjct: 301 IKIFFSEPIVSSLGIYNGFVNGLLYFFLQAIWPVY 335


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 221 GKMDMHLPCIFEQQKDSRRRTQTS*ICLCRKPYTS 325
           GK++ H   +  + +      QTS + LC  PY S
Sbjct: 171 GKINFHQIDVLNEHERVESLLQTSHVLLCNPPYIS 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,436
Number of Sequences: 5004
Number of extensions: 56476
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)