Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2l19
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.3  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   3.0  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    27   4.0  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    26   5.3  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   7.0  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   9.3  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 253 LKFDWEGVLTYGVLATVILTHCVTLFLTAIMLVGTLREKPHLMRPWL 393
           L + W  +     L TV+LT C++LF        TL     LM  WL
Sbjct: 675 LSYSWRSLKETSSLLTVLLTKCLSLF-DEEFTPFTLNYYGELMMTWL 720


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 538 VLVASYYDLLEKDREYGERLKSLNNQHWYN 627
           VLV S    L  DR Y E  +++   HWYN
Sbjct: 249 VLVQSDPGDLPWDRGYSENWRAVMGDHWYN 278


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 162 WLYIIGLNFNPVLRAGNSALLSRHRNSLTVAKVRLGRSF 278
           W   +G +  P+LR  N   L R R S    +  LG+ F
Sbjct: 63  WRQHVGPDLYPLLRLSNLIFLDRERGSYGFKEFGLGKLF 101


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 489 EHRRVAHMTDHVSCGPKHEHENVDHDLHRHPHQPRTHQVRFFPQSADKH 343
           + +R A+  D  SC P H    V+ ++ R  HQ   H + +   + ++H
Sbjct: 212 KRKRQAYELDSQSC-PWHRQYKVEREVSRIFHQDILHFIDYITPTPEEH 259


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 222 LSRHRNSLTVAKVRLGRSFDVWRFGNCHFDTLRHAVPDSH 341
           ++ H NS  V  V+LGR  DVW  G   +  +    P +H
Sbjct: 493 MNAHTNS-GVKLVKLGRPSDVWSLGCILYQMVYGRAPFAH 531


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 367 KPHLMRPWLVWM---SVQIMIYVLMFVFWTTTNM 459
           +PH  + W +WM   S+ ++I   ++V + T N+
Sbjct: 37  RPHFSQFWTIWMKFFSIALVIITQIYVGYKTKNI 70


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +1

Query: 325 LFLTAIMLVGT-----LREKPHLMRPWLVWMSVQI-MIYVLMFVFWTTT 453
           +F+ ++  VG+     + E P L   WL W+ V +   ++++FVF   T
Sbjct: 212 IFMCSVASVGSPMGTGVAENPKLTWRWLYWIDVIVGGFFIILFVFTPET 260


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 21/86 (24%), Positives = 38/86 (44%)
 Frame = +1

Query: 304  ILTHCVTLFLTAIMLVGTLREKPHLMRPWLVWMSVQIMIYVLMFVFWTTTNMVSHMGDTS 483
            IL+HC+   LT I+ +  + + PH +   L W+     I   ++     T   + +   +
Sbjct: 1714 ILSHCILFSLTPILCIPFI-DIPHSV--LLFWLHPSRQIRPPIY-----TRKQNQLRRRT 1765

Query: 484  MLGYALEFLTLLIRFYMLVLVASYYD 561
               Y+L F  LL  F  +++V    D
Sbjct: 1766 FYRYSLLFFALLCTFVAMIVVPLVLD 1791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,963
Number of Sequences: 5004
Number of extensions: 56471
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)