Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2l19
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626... 38 0.009
01_06_0536 + 30068881-30070383 31 0.78
01_05_0415 - 21940466-21941536 31 0.78
03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367... 30 2.4
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 29 4.2
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636... 28 7.3
10_08_0420 - 17788170-17788178,17788239-17789174 28 9.6
10_01_0145 - 1708597-1708824,1710225-1710468,1711217-1711263,171... 28 9.6
02_04_0632 + 24614659-24615528,24615636-24616133 28 9.6
>03_05_0105 -
20861130-20861384,20861472-20862262,20862364-20862618,
20862713-20862827,20862959-20863011,20863113-20863373,
20863699-20863749,20863863-20864114,20864504-20864726,
20865317-20865460
Length = 799
Score = 37.9 bits (84), Expect = 0.009
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = +1
Query: 274 VLTYGVLATVILTHCVTLFLTAIMLVGTLREK-PHLMRPWLVWMSVQIMIYVLMFVFWTT 450
+LT +A VI +T ++ + VG LREK PHL +VW++V I+ V++F
Sbjct: 186 LLTILAIAMVISDAVLTPPISVLSAVGGLREKVPHLTTDQIVWITVAIL--VVLFA---- 239
Query: 451 TNMVSHMGDTSMLGYALEFLTLLIRFYMLVLVASYYDLLEKD 576
+ G T +GY+ F +++ + +L+ Y+L++ D
Sbjct: 240 ---IQRYG-TDKVGYS--FAPIILLWLLLIGATGLYNLIKHD 275
>01_06_0536 + 30068881-30070383
Length = 500
Score = 31.5 bits (68), Expect = 0.78
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 47 NISS*TWCRFVYIQCIRVYLSRWSTFLNKRASDAYLSNLAVYY 175
N+S+ WCRF ++C R Y + L + SDAY + Y
Sbjct: 371 NLSAQFWCRF--LKCFRHYTDMHISVLGEHPSDAYTKTSGLTY 411
>01_05_0415 - 21940466-21941536
Length = 356
Score = 31.5 bits (68), Expect = 0.78
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +3
Query: 6 KELVYELARLRLDEIFLHKLGADSFIYNVYE 98
+ L ELAR+RLDEI H LG D Y+ Y+
Sbjct: 255 RSLTNELARVRLDEIAFHLLGTDE-TYDGYK 284
>03_01_0479 +
3671792-3671844,3671950-3675691,3675815-3675895,
3675973-3676042,3676157-3676224
Length = 1337
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 457 MVSHMGDTSMLGYALEFLTLLIRFYMLVLVASYYDLLEK 573
++SH+ ++ ALEF+++L+ Y + ++Y LLE+
Sbjct: 716 LISHLSKWGVIEEALEFISVLLDCYPSLFFSAYCQLLEE 754
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = +1
Query: 340 IMLVGTLREKPHLMRPWLVWMSVQIMIYVLMFV-----FWTTTNMVSHMGDTSM-LGYAL 501
++L+G + +RPW V ++ ++I L+F +WT+ N ++ T M L +L
Sbjct: 881 LLLLGAISAVIVTIRPWTVGVACLLVILFLVFAIGVIHYWTSNNF--YLTRTQMLLVCSL 938
Query: 502 EFLTLLIRFYM 534
FL L F M
Sbjct: 939 AFLLALAAFLM 949
>12_01_1092 -
11362094-11362367,11362739-11362795,11363256-11363683,
11364350-11365462
Length = 623
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 225 SRHRNSLTVAKVRLGRSFDVWRFGNCHFDTLRHAVPDSH 341
SR+++ LT+ LGR + C DTLR+AV DSH
Sbjct: 580 SRYKDMLTLLTAELGRYCHLGH--EC--DTLRYAVDDSH 614
>10_08_0420 - 17788170-17788178,17788239-17789174
Length = 314
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = -2
Query: 410 CTDIHTSQGRIK*GFSLKVPTSMMAVRNSVTQCVKMTVAKTPYVK 276
C DIH ++G ++ F +V + ++ V +S+++ +K V +K
Sbjct: 208 CLDIHVTKGSVRACFVHRVSSRVVTVAHSISKDMKFDVGSRKGMK 252
>10_01_0145 -
1708597-1708824,1710225-1710468,1711217-1711263,
1711767-1711857,1712982-1713094,1713387-1713462,
1713501-1713560,1713759-1713835,1714105-1714672,
1715332-1715509,1715632-1715774,1717255-1717424,
1717588-1717822,1718565-1718779
Length = 814
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 373 HLMRPWLVWMSVQIMIYVLMFVFWTTTNMVSH 468
H++R WLV+ V ++++ F+F T + SH
Sbjct: 655 HVLRGWLVYFLVLVLLFSAAFMF--LTRLTSH 684
>02_04_0632 + 24614659-24615528,24615636-24616133
Length = 455
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +1
Query: 388 WLVWMSVQIMIYVL----MF--VFWTTTNMVSHMGDTSMLGYALEFLTLLIRFYMLVLVA 549
W+VW V +++ V+ +F + W+ +M L+ LTL RFY++V+
Sbjct: 324 WVVWNQVFLLVDVICCCAVFFPIIWSIRSMREASKTDGKAALNLQKLTLFKRFYLVVVGY 383
Query: 550 SYY 558
Y+
Sbjct: 384 LYF 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,421,835
Number of Sequences: 37544
Number of extensions: 342177
Number of successful extensions: 907
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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