Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2l17
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    29   0.82 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    28   1.4  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   2.5  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   2.5  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   3.3  
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    27   3.3  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   4.4  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   5.8  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   5.8  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.6  

>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 448 KLHTLPDPLMKNLGDTLAMNMTEGEKVKSQEN-KIGGESTLSGITGFFSG 594
           KL  +P+P+ +         + + +K+  + + ++G    L+GITGFF G
Sbjct: 27  KLINIPNPVKQYALPNFVSTLVQEKKIPIENDIELGMPLDLAGITGFFEG 76


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 506 FMANVSPRFFINGSGSVCNLLNNSSPYTLFIS 411
           F +NV+PR FI    SVC ++ N  PY+  +S
Sbjct: 394 FPSNVNPRGFICAEKSVCRVVEN--PYSNTVS 423


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 319 SREMRVRHDPQYFKQ----NCYTNGKYHTDALNDSDMKSVYGEE 438
           S+E++   DPQYF +      Y NG  + ++LN SD   +  +E
Sbjct: 435 SKELKAPPDPQYFTEKTGATTYVNG--NDESLNVSDFPQIVEQE 476


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 231 PHRPSPDIRKYFNSVSCAT*KKFLENEFFEP*NARQTRSAVFQTKLLYQ 377
           PH PS D+  Y NS  C T    +E +F     A Q  +++  T+L  Q
Sbjct: 786 PHCPSVDL--YINSPQCGTLHSGVEYKFNVSAYACQPSTSISNTRLAIQ 832


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 305 FEKFLLRCTRYTIKVFSYIRRRSVRVSATL 216
           + KFL + T+ T++V+S  R  SVR SA +
Sbjct: 311 YRKFLKQFTQATVEVWSSTRDDSVRFSAVV 340


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
 Frame = +3

Query: 9   QNGRTIKTCNTFI----VTMEPLSDF--NFETNKSTSNKDFLTRNNTNKYVKTLNCVPNK 170
           +NGR  KTCN F     V  +P S      ++N    +K      NTN    +++     
Sbjct: 18  ENGRPCKTCNIFSSFRNVAQQPNSSTVPEVKSNTQLESKQSSIDCNTNAIPDSVSFPRLP 77

Query: 171 DLFNLNSDCCVAFCGKCCRYPHRPSP 248
           D+  L              +P  P+P
Sbjct: 78  DVAELGRSTWTFLHAMAANFPKNPTP 103


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 397 ALNDSDMKSVYGEELFNKLHT 459
           AL+DSD++S Y EEL  K  T
Sbjct: 299 ALDDSDLESAYNEELEMKKDT 319


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 365 FCLKYCGSCLTRISRLKKFIFEKFLLRCTRYTIK 264
           +C ++C   +  I  +   IFE F + C+   I+
Sbjct: 764 YCFEFCDGQIPNIQNINMSIFEAFPIACSLQQIE 797


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +1

Query: 223 ADTLTDLRLI*ENTLIVYRVQRKRNFSKMNFLSR-EMRVRHDPQYFKQNCYTNGKYHTDA 399
           AD   D  ++ ++  I +       FS ++F S  E  + +D   F+ + Y      TDA
Sbjct: 94  ADENVDANVLKDSASIRHVSLPDAKFSMVSFSSNGEFVIAYDFVSFELSVY-----ETDA 148

Query: 400 LNDSDMKSVYGEELFNKLHTLPDPLMKNL 486
           L  +   S+Y     + +  LP+P + NL
Sbjct: 149 LLKNSATSIYKAVFPDLVQVLPNPEINNL 177


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = -3

Query: 366 ILFEILRIVSDAHFTAQKIHFREISFTLHTIHY*SIFLYQAKVCEGICNTFHKTQH 199
           +L  + + +S  H   ++I    +   L +IHY  +F+     C  +C+ F K ++
Sbjct: 521 LLHHLRKDISYVHRLPEEIRQTVLDALLGSIHYSFLFVSFMFFCAFVCSMFIKNRN 576


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 114  LTRNNTNKYVKTLNCVPNKDLFNLNSDC 197
            L +NN N +V+    VPN DL   ++ C
Sbjct: 3270 LDKNNNNDFVRLERFVPNVDLVRGHTMC 3297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,362
Number of Sequences: 5004
Number of extensions: 64179
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)