Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2l17
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1046 - 8246740-8247504 33 0.28
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965... 31 1.1
02_05_0682 + 30857876-30858106,30858187-30858399,30858867-308590... 30 1.5
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 30 2.0
06_02_0136 + 12195422-12195435,12196047-12196122,12196896-121977... 29 2.6
02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319 29 2.6
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 28 6.0
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 28 7.9
>01_01_1046 - 8246740-8247504
Length = 254
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 195 CCVAFCGKCCRYPHRPSPDIRKY 263
C VAFC CCRY HR + R Y
Sbjct: 44 CGVAFCSHCCRYHHRHAAVSRWY 66
>02_05_1073 -
33895608-33895880,33896133-33896180,33896273-33896509,
33897233-33897269,33898603-33898913
Length = 301
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 420 LHIAIIQGIRVVFSVGITILFEILR 346
LH AI+ GIRV++ V +T+ F+I +
Sbjct: 171 LHSAILSGIRVLYPVKVTLWFDIFK 195
>02_05_0682 +
30857876-30858106,30858187-30858399,30858867-30859067,
30859832-30860086,30860189-30860884
Length = 531
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +1
Query: 427 YGEELFNKLHTLPDPLMKNLG----DTLAMNMTEGEKVKSQENKIGGESTLSGITGFFSG 594
+G + F K HT P+ L +G D E Q K+ E S + G +
Sbjct: 130 WGTDYFIKAHTKPNELWAEVGDGDTDHYCWQRPEDMTTSRQAYKVDRERPGSDVAGETAA 189
Query: 595 MMSTLAGVMFRRSKP 639
M+ A ++FR+S P
Sbjct: 190 AMAA-ASIVFRKSNP 203
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 114 LTRNNTNKYVKTLNCVPNKDLFNLNSDCCVAF 209
+ RNNTN +TLN NK L+ +S+C + F
Sbjct: 952 VARNNTNDQYQTLNDPVNK-LYTTHSECSIEF 982
>06_02_0136 +
12195422-12195435,12196047-12196122,12196896-12197707,
12197941-12198010,12199469-12199557,12199633-12199666
Length = 364
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 153 NCVPNKDLFNLNSDCCVAFCGKCCRYPHRP 242
NC ++ ++ D C CGK C +P+RP
Sbjct: 156 NCPYGEECPQMHGDLCTT-CGKMCLHPYRP 184
>02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319
Length = 133
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 156 CVPNKDLFNLNSDCCVAFCGKCC 224
C+PN L N S C V FCG CC
Sbjct: 39 CLPNCGLRNSRSFCKV-FCGSCC 60
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 420 LHIAIIQGIRVVFSVGITILFEILRIV 340
LH AI+ G+RVV V T F+I + V
Sbjct: 173 LHSAILSGLRVVCHVNFTFCFDIYKNV 199
>02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 514 EGEKVKSQ-ENKIGGESTLSGITGFFSGMMSTLAGVMFRRSKPSDIYQGT 660
E +K+K +N + S G+ S + TL + R+ +P D++QG+
Sbjct: 1154 ENQKLKEMLQNLLASGSDQMGVITELSEKVKTLERKLARKKRPKDMWQGS 1203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,400,083
Number of Sequences: 37544
Number of extensions: 355943
Number of successful extensions: 843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -