Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2l17
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55374-2|AAB36865.2|  375|Caenorhabditis elegans Hypothetical pr...    31   1.00 
U55374-1|AAP82639.1|  392|Caenorhabditis elegans Hypothetical pr...    31   1.00 
Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z82278-3|CAB05255.1|  347|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF024503-12|AAG24092.2|  329|Caenorhabditis elegans Serpentine r...    29   3.0  
Z82085-4|CAB04986.1|  249|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z49967-2|CAA90248.2|  450|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z82085-8|CAB04990.1|  270|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z82085-1|CAB04984.1|  245|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    28   5.3  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    28   5.3  
Z92838-6|CAB07411.1|   84|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like pr...    27   9.3  
AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical...    27   9.3  

>U55374-2|AAB36865.2|  375|Caenorhabditis elegans Hypothetical
           protein T02C5.1a protein.
          Length = 375

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 454 HTLPDPLMKNLGDTLAMNMTEGEKVKSQENKIGGE 558
           H LPDP  +  GD  + +   GE+ K+ EN+IG E
Sbjct: 143 HQLPDPTYEE-GDDSSSSEEIGEEEKTDENEIGSE 176


>U55374-1|AAP82639.1|  392|Caenorhabditis elegans Hypothetical
           protein T02C5.1b protein.
          Length = 392

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 454 HTLPDPLMKNLGDTLAMNMTEGEKVKSQENKIGGE 558
           H LPDP  +  GD  + +   GE+ K+ EN+IG E
Sbjct: 160 HQLPDPTYEE-GDDSSSSEEIGEEEKTDENEIGSE 193


>Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical
           protein F13H10.4c protein.
          Length = 792

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 647 ISDGFDLRNMTPARVLIIPLKNPVIP---DRVDSPPILFS 537
           +SD F   N+ P  + +IP K+P++    D++  P IL++
Sbjct: 638 VSDAFGYNNLFPMMLKLIPSKSPILKSMLDKIRDPKILWT 677


>Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical
           protein F13H10.4b protein.
          Length = 789

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 647 ISDGFDLRNMTPARVLIIPLKNPVIP---DRVDSPPILFS 537
           +SD F   N+ P  + +IP K+P++    D++  P IL++
Sbjct: 635 VSDAFGYNNLFPMMLKLIPSKSPILKSMLDKIRDPKILWT 674


>Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical
           protein F13H10.4a protein.
          Length = 796

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 647 ISDGFDLRNMTPARVLIIPLKNPVIP---DRVDSPPILFS 537
           +SD F   N+ P  + +IP K+P++    D++  P IL++
Sbjct: 642 VSDAFGYNNLFPMMLKLIPSKSPILKSMLDKIRDPKILWT 681


>Z82278-3|CAB05255.1|  347|Caenorhabditis elegans Hypothetical
           protein M162.3 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = -1

Query: 503 MANVSPRFFINGSGSVCNLLNNSSPYTLFISLSFRASVWYFPLV*QFCLKYCGSCLTRIS 324
           +A V+P  +I   G +C   N++SP  +++SL+      +  +V +  L    + +  IS
Sbjct: 261 LAIVTPAEWILAFGQICWTCNHASPAIIYVSLNSTIRREFLKIVFRNTLAPV-NLIFGIS 319

Query: 323 RLKKFIFEKF 294
            LK  +F K+
Sbjct: 320 ELKSLVFRKW 329


>AF024503-12|AAG24092.2|  329|Caenorhabditis elegans Serpentine
           receptor, class u protein25 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 384 FSVGITILFEIL--RIVSDAHFTAQKIHFREISFTLHTIHY*SIFLYQAKVCEGICNTF 214
           F++ + ++++++  ++   AH  +QK H  EIS TL TI     +L    +   IC  F
Sbjct: 219 FTINLILIWKLIHYKLTLSAHAKSQKPHKAEISLTLTTISMTCSYLTNGMIT--ICGLF 275


>Z82085-4|CAB04986.1|  249|Caenorhabditis elegans Hypothetical
           protein ZK218.5 protein.
          Length = 249

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 171 DLFNLNSDCCVAFCGKCCRYPHRPSPDIRKYFNSVSCAT 287
           DL    +  C   CG CC  P    P+++  F  ++CAT
Sbjct: 95  DLVKTAAASCPKTCGYCCESPDYKCPNVQ--FPRLNCAT 131


>Z49967-2|CAA90248.2|  450|Caenorhabditis elegans Hypothetical
           protein F54C9.2 protein.
          Length = 450

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 292 RNFSKMN--FLSREMRVRHDPQYFKQNCYTNGKYHTDALNDSDMKSVYGEELFNK-LHTL 462
           RNF K N  FLS + R       FK N  + GK   +   DS  K+VY EE+ +  +  L
Sbjct: 108 RNFEKNNKDFLSDQKRYP-----FKINLDSEGKAFFEIPLDSGTKNVYPEEIGSLIIGYL 162

Query: 463 PDPLMKNLGDTL 498
                K+LG TL
Sbjct: 163 KSAAAKHLGVTL 174


>Z82085-8|CAB04990.1|  270|Caenorhabditis elegans Hypothetical
           protein ZK218.11 protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 165 NKDLFNLNSDCCVAFCGKCCRYPHRPSPDIRKYFNSVSCAT 287
           N DL N     C   CG CC+      P++R  F  ++C T
Sbjct: 108 NPDLVNAAVSTCPKTCGFCCQSSDYNCPNVR--FPRLNCDT 146


>Z82085-1|CAB04984.1|  245|Caenorhabditis elegans Hypothetical
           protein ZK218.1 protein.
          Length = 245

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 171 DLFNLNSDCCVAFCGKCCRYPHRPSPDIRKYFNSVSCAT 287
           DL       C   CG CC+ P    P+++  F  ++CAT
Sbjct: 95  DLVRAAVSTCPKTCGYCCQSPDYNCPNVQ--FPRLNCAT 131


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
 Frame = +3

Query: 33  CNTFIVTMEPLSDFNFETNKSTSNKDFLTRNNTNKYVKTLNCVPNKDLFNL----NSDCC 200
           CN       PLS+  FE       +  L   + N+ +    C+ N    NL      DC 
Sbjct: 334 CNHGTCIDSPLSEKAFECQCEPGYEGILCEQDKNECLSENMCLNNGTCVNLPGSFRCDCA 393

Query: 201 VAFCGKCCRYP 233
             F GK C  P
Sbjct: 394 RGFGGKWCDEP 404


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
 Frame = +3

Query: 33  CNTFIVTMEPLSDFNFETNKSTSNKDFLTRNNTNKYVKTLNCVPNKDLFNL----NSDCC 200
           CN       PLS+  FE       +  L   + N+ +    C+ N    NL      DC 
Sbjct: 334 CNHGTCIDSPLSEKAFECQCEPGYEGILCEQDKNECLSENMCLNNGTCVNLPGSFRCDCA 393

Query: 201 VAFCGKCCRYP 233
             F GK C  P
Sbjct: 394 RGFGGKWCDEP 404


>Z92838-6|CAB07411.1|   84|Caenorhabditis elegans Hypothetical
           protein T03D8.7 protein.
          Length = 84

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 129 TNKYVKTLNCVPNKDLFNLNSDCCVAFCGKC 221
           +N Y+ T  C  N   ++ +  CC A CG+C
Sbjct: 54  SNCYMYTAYC--NNPYYSCSMSCCKATCGQC 82


>U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like
           protein protein 8 protein.
          Length = 594

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 24/89 (26%), Positives = 41/89 (46%)
 Frame = +1

Query: 262 TLIVYRVQRKRNFSKMNFLSREMRVRHDPQYFKQNCYTNGKYHTDALNDSDMKSVYGEEL 441
           TL   +++R +N  K++  +R     HD +  ++   T  +  T   ND D K+VY E  
Sbjct: 429 TLRHEKMERSQNPRKISRHNRSSA--HDEESARRRSRTFSQDDTAVPNDPDSKNVYYENQ 486

Query: 442 FNKLHTLPDPLMKNLGDTLAMNMTEGEKV 528
            +K       L + L D + + + E E V
Sbjct: 487 LSKKDYDIQELRRQLMD-VEIRLRENESV 514


>AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical
           protein F16B4.11 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 27  KTCNTFIVTMEPLSDFNFETNKSTSNKDFLTRNNTNKYVKTLNCVPNK 170
           K C     +   ++  N + ++  +    L+  N N+ +K  N +PNK
Sbjct: 86  KKCRLAKCSEAGMNSRNIQYDRDANKTSLLSSTNVNRNMKNKNAIPNK 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,044,479
Number of Sequences: 27780
Number of extensions: 359153
Number of successful extensions: 1034
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)