Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2l14
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    28   0.49 
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   3.5  
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    25   6.1  
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        24   8.0  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.0  
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    24   8.0  

>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -3

Query: 246 LSLSKSPIDNYGCQSDRQLTSATSR-IYLRVEKWKTKHLQ 130
           LSLS+S ID+Y     R+L  A  +   +R+++++ KH+Q
Sbjct: 48  LSLSRS-IDDYDSMVQRELVPAKKKKATIRIQEFRQKHVQ 86


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 239 CQSHPLTITAVRVTDSSRQQQVEFISGSKNGKQNICKKHFHTNSCVL 99
           C  HP T+  +      R  ++  ++ SK  + + C+ HF+  SC L
Sbjct: 218 CAFHP-TLPLILSAGDDRLVKLWRMTASKAWEVDTCRGHFNNVSCCL 263


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 264 HFFCAQLSLSKSPIDNYGCQSDRQLTSA 181
           H F  QL+  +  +D Y   SDR + SA
Sbjct: 151 HIFLPQLNFLRHVVDKYKSLSDRIIMSA 178


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 194 SSRQQQVEFISGSKNGKQNICKKHF 120
           SS + Q E +S S+NGKQ + +  F
Sbjct: 57  SSLKSQEEMVSVSRNGKQLLSEASF 81


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 267 RHFFCAQLSLSKSPIDNYGCQSD 199
           + ++   LS   SP D++ C SD
Sbjct: 99  KKYYATDLSFVNSPADSFWCDSD 121


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 233 FDNESCAQKKCRTNGTRICFYLMNFNYTRNAFINYLFSCFS 355
           FD+   AQ+ CRT G+R   Y  +    R +  +Y +S +S
Sbjct: 41  FDSYEAAQEFCRTEGSR---YSSSSGPYRRSTTSYGYSPYS 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,475,546
Number of Sequences: 5004
Number of extensions: 27211
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)