Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2l14
(410 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical pr... 28 3.0
U23519-4|AAK31501.1| 358|Caenorhabditis elegans Toxin-regulated... 27 4.0
AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical... 27 5.3
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 27 5.3
Z99283-5|CAE46680.1| 308|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z99283-4|CAB16534.1| 342|Caenorhabditis elegans Hypothetical pr... 27 7.0
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF067950-3|AAG24158.2| 371|Caenorhabditis elegans Serpentine re... 27 7.0
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 27 7.0
Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical pr... 26 9.2
AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin... 26 9.2
>U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical
protein B0507.6 protein.
Length = 857
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/65 (24%), Positives = 25/65 (38%)
Frame = -1
Query: 323 HYVCN*NSLNKNKYVCRLFDISFAHNFHCQSHPLTITAVRVTDSSRQQQVEFISGSKNGK 144
H +CN K+ + +F NF HP+ IT T + + + G N
Sbjct: 286 HEICNDVQSYPGKHYDKNTSSNFVFNFEIDEHPVPITP---TSPKQNYEKTYKDGDSNQT 342
Query: 143 QNICK 129
IC+
Sbjct: 343 GGICE 347
>U23519-4|AAK31501.1| 358|Caenorhabditis elegans Toxin-regulated
target of p38mapkprotein 2 protein.
Length = 358
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 305 NSLNKNKYVCRLFDISFAHNFHCQSHPLTITAVRVTDSSRQ 183
N L K +Y ++ I AHNF S+ + IT V + SSR+
Sbjct: 292 NGLFKTEYSLKV-TIGRAHNFVLASYEVPITIVTMDQSSRR 331
>AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical
protein Y75B8A.34 protein.
Length = 344
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 326 FINYLFSCFSVAFVFVIIKLRCLSFKKK 409
+++Y + FSVA F++ RCLSF K
Sbjct: 125 YLDYSSNFFSVAITFLMSLNRCLSFGAK 152
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 193 AHVSNKSNLSQGRKMENKTFAKNTFI-RIRVYFPLDYDFSQLFE 65
A+ +N+S L++G K+ TF RI+ YF ++Y F +F+
Sbjct: 350 AYYANRS-LARGEKIPKNDEVPRTFWERIKFYFKVEYVFMLVFQ 392
>Z99283-5|CAE46680.1| 308|Caenorhabditis elegans Hypothetical
protein Y70C5C.6b protein.
Length = 308
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 162 RVEKWKTKHLQKTLSYEFVCTSL*TMILVNYLKNCY 55
+++ + KHL +T+ E C+SL T I N Y
Sbjct: 34 KIQLTRDKHLNRTIKLEGPCSSLDTPITSRQTPNLY 69
>Z99283-4|CAB16534.1| 342|Caenorhabditis elegans Hypothetical
protein Y70C5C.6a protein.
Length = 342
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 162 RVEKWKTKHLQKTLSYEFVCTSL*TMILVNYLKNCY 55
+++ + KHL +T+ E C+SL T I N Y
Sbjct: 68 KIQLTRDKHLNRTIKLEGPCSSLDTPITSRQTPNLY 103
>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
protein W02C12.1 protein.
Length = 1372
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 236 DNESCAQKKCRTNG 277
DN SCA K CR NG
Sbjct: 256 DNGSCAAKPCRNNG 269
>AF067950-3|AAG24158.2| 371|Caenorhabditis elegans Serpentine
receptor, class w protein137 protein.
Length = 371
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 183 ATSRIYLRVEKWKTKHLQKTLSYEFVCTSL*TMILVNYL 67
+T+R R+E++ +K LSYE + + T ILVN L
Sbjct: 17 STARRLYRIERYLAVFTEKVLSYESIISI--TCILVNIL 53
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 279 VPFVRHFFCAQLSLSKSPIDNYGC 208
VP + FFC L +S P NY C
Sbjct: 267 VPMLILFFCPALHISTEPYTNYIC 290
>Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical
protein R06C7.9 protein.
Length = 729
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 247 LCAKEMSNKRHTYLFLFNEF 306
LC KE S + H YL L E+
Sbjct: 209 LCGKEFSKRTHIYLHLSQEY 228
>AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform b protein.
Length = 963
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 311 YTRNAFINYLFSCFSVAFVFVIIKLR 388
+TR N F CFS F ++K+R
Sbjct: 933 FTRKTIFNRFFLCFSHIFGLFLVKIR 958
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,157,898
Number of Sequences: 27780
Number of extensions: 155196
Number of successful extensions: 456
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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