Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2l14
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    27   0.11 
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   7.2  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   7.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.2  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    20   9.5  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      20   9.5  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = -3

Query: 108 VCTSL*TMILVNYLKNCYR----*CGRFDIYK 25
           +C++   M+++N L+N Y      CG+ D+YK
Sbjct: 503 ICSTATPMMVINMLQNLYEQFDSFCGQLDVYK 534



 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 128 FCKCFVFHFSTLR*IRLV 181
           FCK F +HF   R + LV
Sbjct: 291 FCKAFPWHFVVDRQLELV 308


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 188 RQQQVEFISGSKNGKQNICKKHFHTNSCVLPSRL 87
           R++  +  S   N   N CK    +NSC   S+L
Sbjct: 85  RERTTKLDSEQVNRLVNNCKDITESNSCKKSSKL 118


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +2

Query: 113 SYESVFCKCF 142
           +++S+ CKCF
Sbjct: 72  AFKSIICKCF 81


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +2

Query: 113 SYESVFCKCF 142
           +++S+ CKCF
Sbjct: 520 AFKSIICKCF 529


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 308 NYTRNAFINYLFSCFSVAFVFVIIKLRC 391
           NY++NA        FS   + +II  +C
Sbjct: 3   NYSKNATHLITVLLFSFVVILLIIPSKC 30


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 308 NYTRNAFINYLFSCFSVAFVFVIIKLRC 391
           NY++NA        FS   + +II  +C
Sbjct: 3   NYSKNATHLITVLLFSFVVILLIIPSKC 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,685
Number of Sequences: 438
Number of extensions: 1618
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)