Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2l12
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78012-2|CAB01412.1|  120|Caenorhabditis elegans Hypothetical pr...    93   2e-19
AL132860-2|CAB60512.1|  117|Caenorhabditis elegans Hypothetical ...    77   6e-15
Z71259-9|CAA95795.1|  146|Caenorhabditis elegans Hypothetical pr...    46   2e-05
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    28   5.1  
AF016432-5|AAB65378.1|  347|Caenorhabditis elegans Seven tm rece...    27   6.8  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z78012-2|CAB01412.1|  120|Caenorhabditis elegans Hypothetical
           protein C52E4.2 protein.
          Length = 120

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 40/113 (35%), Positives = 65/113 (57%)
 Frame = +3

Query: 78  MPHFRIETNISRSKIPADFVVKAIPVLAKALGKPEQYCVVTVIPEMLMSFGGSTEPCAIA 257
           MP  R+ TN+   K+P DF ++   +LA+++GKP +   V +     +  G + +P  + 
Sbjct: 1   MPMVRVATNLPNEKVPVDFEIRLTDLLARSMGKPRERIAVEIAAGARLVHGATHDPVTVI 60

Query: 258 NLMSIGSLGVEQNKKHAKVLFELVEKELGVPTDRMYITFQDEPTGNVGFKGTT 416
           ++ SIG++  E N ++   + E   KELG+P D++ ITF D P   VGF GTT
Sbjct: 61  SIKSIGAVSAEDNIRNTAAITEFCGKELGLPKDKVVITFHDLPPATVGFNGTT 113


>AL132860-2|CAB60512.1|  117|Caenorhabditis elegans Hypothetical
           protein Y56A3A.3 protein.
          Length = 117

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
 Frame = +3

Query: 78  MPHFRIETNISRSKIPADFVVKAIP-VLAKALGKPEQYCVVTVIPEMLMSFGGSTEPCAI 254
           MP F I  N+       + ++K +  VL K L KPEQY  +    +  + + G+TEP   
Sbjct: 1   MPVFSINVNVKVPAEKQNEILKELSTVLGKLLNKPEQYMCIHFHEDQGILYAGTTEPAGF 60

Query: 255 ANLMSIGSLG-VEQNKKHAKVLFELVEKELGVPTDRMYITFQDEPTGNVGFKGTTF 419
           A L SIG +G  +QN   + V+F ++EK LG+P +R+YI F +    ++ + G TF
Sbjct: 61  AVLKSIGGVGSAKQNNAISAVVFPIIEKHLGIPGNRLYIEFVNLGAADIAYNGQTF 116


>Z71259-9|CAA95795.1|  146|Caenorhabditis elegans Hypothetical
           protein F13G3.9 protein.
          Length = 146

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 28/111 (25%), Positives = 54/111 (48%)
 Frame = +3

Query: 78  MPHFRIETNISRSKIPADFVVKAIPVLAKALGKPEQYCVVTVIPEMLMSFGGSTEPCAIA 257
           MP  +++TN+   K+   F V+    +AK + +PE    V++     M+ G  T+P A+ 
Sbjct: 1   MPVIKVQTNVK--KVSDGFEVRLAIHMAKVMKRPESQIFVSLDMNSRMTRGQLTDPLAVL 58

Query: 258 NLMSIGSLGVEQNKKHAKVLFELVEKELGVPTDRMYITFQDEPTGNVGFKG 410
           ++ S   L     +++   L E   +EL + +D + I ++      +GF G
Sbjct: 59  DVTSSTVLTPILTEEYTVALCEFFSQELALDSDAVLINYRSLSPELIGFNG 109


>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
           isoform a protein.
          Length = 1702

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 412 VPLNPTLPVGSSWKVMYMRSVGTPSSFSTNSKRTLAC 302
           VP+NP+LPV S  +     +   PS+F  +  R   C
Sbjct: 620 VPMNPSLPVSSHSESQVRSTKKLPSNFKEDDIRHSTC 656


>AF016432-5|AAB65378.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 225 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 466 YGLDIVFYNVYPKIAWKVVPLNPTLPVGSSWKVMYMRSV 350
           YG  +  ++++    W VV  NP L   + WK++   S+
Sbjct: 102 YGASMAVFSLHFIYRWLVVTENPLLETFNGWKIILWFSI 140


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
           protein T01D3.7 protein.
          Length = 2882

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 219 MSFGGSTEPCAIANLMSIGSLGVEQNKKHAKVLFELVEKELGVPTDRMYIT 371
           + F G     +I N+   G + +  NK     + ++V+    VP+  ++IT
Sbjct: 169 IDFDGGDSVVSIKNVNENGKISISNNKFTKNTMHDIVKLLESVPSSEIFIT 219


>AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.10 protein.
          Length = 871

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -2

Query: 487 IISRYLSYGLDIVFYNVYPKIAWKVVPLNPTLPVGSSWKVMYMRSVGTPSSFS-TNSKRT 311
           + + YL Y     F   +PK+  K+   + TL    +WKV + R +        + + R 
Sbjct: 368 VYAHYLRYTTTYSFRVWFPKLPLKIWMSSSTLSTIKNWKVGFWRDLPLGGGVKRSRAARQ 427

Query: 310 LAC 302
            AC
Sbjct: 428 FAC 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,090
Number of Sequences: 27780
Number of extensions: 290447
Number of successful extensions: 767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)