Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2k15
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    77   2e-15
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    26   5.0  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   5.0  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   5.0  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   6.6  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.6  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    25   8.7  

>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 4/168 (2%)
 Frame = +2

Query: 257 KVLCVGLNYKDHCEEQKLTPPELPFIFNKFPSTVVGP-NDTIKLKMDVSKAVVCEIELTV 433
           KV+C+G NY  H  E     P  PF F K  S +V P +  + +  DVS     E+ L +
Sbjct: 7   KVVCIGRNYAAHIRELNNPFPTKPFFFLKPTSAIVEPGHGNLIIPPDVSAHYEVELGLIM 66

Query: 434 VIGKKASKVDSSHAF-DYVLGYTIAQDIGATDWEKNKKISQL--LLGKAMDTFCPIGPWI 604
                A +  SS+++ D +  Y +  D+ A + +   K   L     K  DTF P+GP I
Sbjct: 67  KDRLPARRPVSSNSWLDSIGAYFVGIDMTARNIQNEAKKKGLPWSFAKGYDTFLPVGP-I 125

Query: 605 VTSDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIPDIIARLSNVMTL 748
           +    I +P N+ ++ S+NG   QK +T+  ++KIP I + ++  M+L
Sbjct: 126 IPKHLIPDPHNVILELSLNGKVVQKDSTSLMLNKIPKIFSSITEAMSL 173


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 341 KFPSTVVGPNDTIKLKM---DVSKAVVCEIELTVVIGKKASKVDSSHAFDYVLGYTI 502
           K P+ ++   D   LK+       A++ E E+T VI K   ++ +    D+V+ YTI
Sbjct: 210 KLPNDLLNFADRHHLKLFFHSDPSALLSESEITSVIHKACPEIPNPARVDWVIRYTI 266


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 505 PGYRRYRLGEEQENQSIAVG*SNGHLLPNWTLDSYQR*DRKSSEFECKVQ 654
           PG  +  LG  +  ++  V   + HLLP W+   +++    ++ F  KV+
Sbjct: 13  PGISKAFLGSNRVLETAGVSQLSKHLLPQWSGVPHRKISASATNFNDKVK 62


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 602 IVTSDEIGNPQNLNVKCSINGVQKQKSNTNQFIHKIP-DIIARLSNVMTLL 751
           I+ S  I   Q+++V  SIN ++K+KSNT   + K+  D I  L    T+L
Sbjct: 619 IILSGPIITEQDVDV--SINRIRKEKSNTIFTVPKVNWDDIGGLEEAKTVL 667


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -2

Query: 429  VSSISQTTALLTSIFNLMVSFGPTTVLGNLLNIKGSSGGVNFCSSQ 292
            V  I Q T LL  I N  V      V GNLL++      +NF   Q
Sbjct: 1895 VDHIGQQTNLLLEIVNYNVENQQYVVSGNLLSLSTLGHVLNFLKVQ 1940


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 251 NDKVLCVGLNYKDHCEEQKLTPPELPFI 334
           ND    +  +  DH +  ++TP ELPF+
Sbjct: 247 NDSTAKIETSIHDHRDISRITPFELPFV 274


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 500 LCSRGHNQRHAMNLLYWLSSRL 435
           LC +G+N+   + L YW+ +R+
Sbjct: 261 LCHKGYNRNLELILSYWIPTRI 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,419
Number of Sequences: 5004
Number of extensions: 70700
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)