Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2k11
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 120 2e-27
12_01_0273 - 1989058-1989349,1989730-1989837,1990315-1990508,199... 114 7e-26
11_01_0272 - 2042490-2042781,2043146-2043203,2043385-2043401,204... 114 7e-26
03_02_0442 + 8529235-8529620,8529721-8529888,8529993-8530158,853... 113 1e-25
02_05_1265 - 35326506-35326773,35326944-35327109,35327194-353273... 109 2e-24
07_03_1557 - 27699675-27699972,27700546-27700630,27700741-277008... 109 3e-24
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 60 3e-09
07_03_1728 + 29076733-29079069 36 0.029
06_03_0539 + 21919115-21919313,21919474-21919582,21920595-219208... 31 1.5
03_01_0298 + 2318836-2319051,2321238-2323106 30 1.9
01_06_0675 + 31092877-31092916,31093349-31093503,31093570-310936... 29 3.4
01_06_0592 + 30465956-30466210,30466401-30466529,30466631-304667... 29 3.4
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971... 29 4.4
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959... 29 4.4
01_01_0267 + 2201404-2202501 29 4.4
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 29 5.9
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 28 7.8
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 120 bits (288), Expect = 2e-27
Identities = 59/128 (46%), Positives = 85/128 (66%), Gaps = 3/128 (2%)
Frame = +1
Query: 430 GEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERDLLMQDFMTVET--TNFPHEGSNHTP 603
G+ K ++ ++M +QLGI+H++G A+ P R+L DF E T FP EGS TP
Sbjct: 320 GQTISKGHKNYELMLQLQLGIRHSVGKSAAVPMRELSPADFDPKEKFWTRFPPEGSKVTP 379
Query: 604 AHHYSEFKFKTYAPIAFRYFRDLFGIQPDDFLMSMC-SAPLRELSNPGASGSIFYLTNDD 780
H S+F++K Y P+ FR+ R LF + P D+++++C + LRELS+PG SGS FYLT DD
Sbjct: 380 PHSSSDFRWKDYCPMVFRHLRKLFSVDPADYMIAICGNDALRELSSPGKSGSFFYLTQDD 439
Query: 781 EFIIKTVQ 804
F+IKTV+
Sbjct: 440 RFMIKTVK 447
>12_01_0273 -
1989058-1989349,1989730-1989837,1990315-1990508,
1990601-1990717,1990801-1990966,1991323-1991490,
1991734-1993052
Length = 787
Score = 114 bits (275), Expect = 7e-26
Identities = 56/128 (43%), Positives = 81/128 (63%), Gaps = 3/128 (2%)
Frame = +1
Query: 430 GEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERDLLMQDFMTVET--TNFPHEGSNHTP 603
GE K ++ ++M ++QLGI+HA+G ++ DL F E T FP EGS HTP
Sbjct: 419 GETISKGHKNYELMLNLQLGIRHAVGRQSAPASLDLKSSAFDPKEKVWTRFPPEGSKHTP 478
Query: 604 AHHYSEFKFKTYAPIAFRYFRDLFGIQPDDFLMSMC-SAPLRELSNPGASGSIFYLTNDD 780
H +F++K Y P+ FR R LF + P D+++S+C L ELS+PG SGS FY TNDD
Sbjct: 479 PHQSCDFRWKDYCPLVFRTLRKLFDVDPGDYMLSICGDDALLELSSPGKSGSFFYFTNDD 538
Query: 781 EFIIKTVQ 804
+++IKT++
Sbjct: 539 KYMIKTMK 546
>11_01_0272 -
2042490-2042781,2043146-2043203,2043385-2043401,
2043572-2043765,2043858-2043974,2044059-2044224,
2044430-2044597,2044741-2046047
Length = 772
Score = 114 bits (275), Expect = 7e-26
Identities = 56/128 (43%), Positives = 81/128 (63%), Gaps = 3/128 (2%)
Frame = +1
Query: 430 GEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERDLLMQDFMTVET--TNFPHEGSNHTP 603
GE K ++ ++M ++QLGI+HA+G ++ DL F E T FP EGS HTP
Sbjct: 415 GETISKGHKNYELMLNLQLGIRHAVGRQSAPASLDLKSSAFDPKEKVWTRFPPEGSKHTP 474
Query: 604 AHHYSEFKFKTYAPIAFRYFRDLFGIQPDDFLMSMC-SAPLRELSNPGASGSIFYLTNDD 780
H +F++K Y P+ FR R LF + P D+++S+C L ELS+PG SGS FY TNDD
Sbjct: 475 PHQSCDFRWKDYCPLVFRTLRKLFDVDPGDYMLSICGDDALLELSSPGKSGSFFYFTNDD 534
Query: 781 EFIIKTVQ 804
+++IKT++
Sbjct: 535 KYMIKTMK 542
>03_02_0442 +
8529235-8529620,8529721-8529888,8529993-8530158,
8530579-8530689,8530845-8530993,8531087-8531217,
8531322-8531421,8532060-8532366
Length = 505
Score = 113 bits (273), Expect = 1e-25
Identities = 55/128 (42%), Positives = 83/128 (64%), Gaps = 3/128 (2%)
Frame = +1
Query: 430 GEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERDLLMQDFMTVET--TNFPHEGSNHTP 603
GE K +S +M ++QLGI +++G ++ P + L DF E T FP EGS TP
Sbjct: 108 GEAIRKGHRSYSLMLNLQLGISYSVGKSSALPFQKLAASDFDPREKVWTRFPPEGSKFTP 167
Query: 604 AHHYSEFKFKTYAPIAFRYFRDLFGIQPDDFLMSMC-SAPLRELSNPGASGSIFYLTNDD 780
HH +F++K Y P FR+ R LFG+ P ++++++C + LREL++PG SGS F++T DD
Sbjct: 168 PHHSVDFRWKDYCPAVFRHLRKLFGVDPAEYMLAICGNDTLRELASPGKSGSCFFITQDD 227
Query: 781 EFIIKTVQ 804
F+IKTV+
Sbjct: 228 RFMIKTVK 235
>02_05_1265 -
35326506-35326773,35326944-35327109,35327194-35327351,
35327779-35327966,35328046-35328156,35328311-35328476,
35328718-35328885,35329374-35330623
Length = 824
Score = 109 bits (263), Expect = 2e-24
Identities = 64/189 (33%), Positives = 105/189 (55%), Gaps = 3/189 (1%)
Frame = +1
Query: 247 SSVLKKSENATEQSVAEDDDRDRSSIAEKNVPYDPAVGPMGAISKVHKSDRKIGHRRVGE 426
SS L++SE+ + + + + V D + K + +KI R +
Sbjct: 338 SSGLERSESINDSDLPMLEREYMQGVLISEVVLDRSFSDSS--KKAKRRQKKIV-RETKK 394
Query: 427 GGEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERDLLMQDFMTVET--TNFPHEGSNHT 600
GE K +S +M S+QLGI++ +G + +R++ DF + FP EGS T
Sbjct: 395 PGETIIKGHRSYDLMLSLQLGIRYTVGKITPIQKREVRASDFGPRASFWMTFPKEGSRLT 454
Query: 601 PAHHYSEFKFKTYAPIAFRYFRDLFGIQPDDFLMSMC-SAPLRELSNPGASGSIFYLTND 777
P+H +FK+K Y P+ FR R++F I D+++S+C ++ LRELS+PG SGS+F+L+ D
Sbjct: 455 PSHPAEDFKWKDYCPMVFRNLREMFKIDAADYMISICGNSALRELSSPGKSGSVFFLSQD 514
Query: 778 DEFIIKTVQ 804
D F+IKT++
Sbjct: 515 DRFMIKTLR 523
>07_03_1557 -
27699675-27699972,27700546-27700630,27700741-27700847,
27700942-27701135,27701252-27701368,27701466-27701631,
27701723-27701887,27702185-27703428
Length = 791
Score = 109 bits (261), Expect = 3e-24
Identities = 59/134 (44%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Frame = +1
Query: 412 RRVGEGGEITYKKIQSSQIMGSIQLGIQHAIGGLASKPERDLLMQDFMTVET--TNFPHE 585
R GE K ++ ++M ++QLGI+HA+G DL F E T FP E
Sbjct: 388 REAKRQGETIAKGHKNYELMLNLQLGIRHAVGK-QGPVTLDLKSSAFDPKEKVWTKFPPE 446
Query: 586 GSNHTPAHHYSEFKFKTYAPIAFRYFRDLFGIQPDDFLMSMC-SAPLRELSNPGASGSIF 762
GS +TP H+ +FK+K Y P FR R LF + D+++S+C S LRELS+PG SGS F
Sbjct: 447 GSKYTPPHNSCDFKWKDYCPQVFRTLRKLFKVDAADYMLSLCGSEALRELSSPGKSGSFF 506
Query: 763 YLTNDDEFIIKTVQ 804
YLTNDD ++IKT++
Sbjct: 507 YLTNDDRYMIKTMK 520
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 59.7 bits (138), Expect = 3e-09
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +1
Query: 646 IAFRYFRDLFGIQPDDFLMSMCSAP-LRELSNPGASGSIFYLTNDDEFIIKTVQ 804
+ R R++F I D++MS+C L+ELS+PG SGSIFYL+ D+ F+IKT++
Sbjct: 378 LGIRNLREMFHIDAADYMMSICGGDSLKELSSPGKSGSIFYLSQDERFVIKTLR 431
>07_03_1728 + 29076733-29079069
Length = 778
Score = 36.3 bits (80), Expect = 0.029
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = -3
Query: 680 IPNKSLK*RNAIGAYVLNLNSE**WAGVWFDPSWGKFVVSTVMKSCMSRSRSGFDAR--- 510
IP+++L+ L L + AG+W D +GK V+ V+ + + S FD R
Sbjct: 118 IPDRTLQLMTTHTPEFLGLRKD---AGLWRDSGYGKGVIVGVLDTGIDSSHPSFDDRGVP 174
Query: 509 PPIACWMPSCID 474
PP A W SC D
Sbjct: 175 PPPARWKGSCRD 186
>06_03_0539 +
21919115-21919313,21919474-21919582,21920595-21920819,
21921140-21921239,21921782-21921865,21922000-21922058,
21922578-21922770
Length = 322
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -2
Query: 477 RSHDLRGLYLLVCDLSALADAPVSDLPVRLVNFADRAHWADGWVVRYIFFGDRTPVAIIV 298
R ++L + ++V D+S D + + F D D W+ RY F G P A ++
Sbjct: 178 RENELSNVEIIVADISKFEMERSFDRIISIEMFEDNNE--DDWITRYFFTGGTMPSANLL 235
Query: 297 L 295
L
Sbjct: 236 L 236
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 30.3 bits (65), Expect = 1.9
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Frame = +1
Query: 217 GDSDHIEVMESSVLKKSENATEQSVAEDDDRDRSSIAEKNVPYDPAVGPMGAISKVHKSD 396
G S H+++ ++A ++AE + S I + D MG + V D
Sbjct: 379 GTSHHVQIHTFGFGTDHDSAAMHAIAETSNGTFSFIDAEGSIQDAFAQCMGGLLSVVVKD 438
Query: 397 RKIGHRRVGEGGEITYKKIQS--SQIMGSIQLGIQHAIGGLASKPERDLLM 543
++ + EG +T K S SQ+ G+ + G+ IG L + ER L+
Sbjct: 439 MRLCIECIDEGVSLTSIKSGSYASQVAGNERSGLVD-IGDLYADEERGFLV 488
>01_06_0675 + 31092877-31092916,31093349-31093503,31093570-31093677,
31094283-31094487,31094858-31094955,31095052-31095135,
31095227-31095304,31095462-31095554,31095646-31095675,
31095932-31096273,31096353-31096434,31096527-31096622,
31096728-31096907,31097002-31097108,31097207-31097308,
31097611-31097666,31097749-31098002,31098077-31098240,
31098564-31098747,31098825-31098969,31099561-31099661,
31099803-31099870
Length = 923
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Frame = +1
Query: 196 SETKMASGDSDHIEVMESSVLKKSENATEQSVAEDDDRDRSSIAEKNVPYDPAVGPMGAI 375
S +AS + + V+ + L + A +D+ + Y PA +
Sbjct: 806 SSLPVASQQNQQLSVVTLTPLADTGLAGSVEAEAEDNASDDGCSVGETEYSPAGASETSA 865
Query: 376 SKVHKSDRKIGHRRVGEGGEITYKKIQSSQIM----GSIQLGIQHAIGGLASKPER 531
+ HK+ +I + + G+ + + + +++ GS++ G A GG +KP +
Sbjct: 866 ERAHKAPSRITRFFLTKNGQPSTSRPKPREVVPKTQGSMRPGTAQATGGSLAKPSK 921
>01_06_0592 +
30465956-30466210,30466401-30466529,30466631-30466760,
30466861-30466981,30467111-30467192,30467334-30467384,
30467836-30467929,30468046-30468173
Length = 329
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 444 QEDTVLADHGIDTARHPARYRRPSVEARTRSTHAGLHDRRDDEFPPRGIEPHARPSLFRV 623
QED+ D P RYR+ EAR R+ A RR E+ +G + +P F++
Sbjct: 265 QEDSGKGSSWSDVWGAPTRYRKNEDEARERAKRAAAAARRWREYSRKGAD---KPPTFKL 321
>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
17097266-17097494,17097857-17097981
Length = 1814
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 223 SDHIEVMESSVLKKSENATEQSVAEDDDRDRSSIAEKNVPYDPAV 357
S +++ E S + E+SVA+ D D +SI +NV D +
Sbjct: 1034 SKSLKIFEGSASIRESRDAERSVADSDKVDDASIESRNVDRDAEI 1078
>07_03_1748 -
29195037-29195427,29195552-29195679,29195810-29195938,
29196334-29196412,29196508-29196671,29196754-29196936,
29197021-29197146,29197237-29197328,29197412-29197508,
29198013-29198339
Length = 571
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 447 EDTVLADH--GIDTARHPARYRRPSVEARTRSTHAGLHDRRDDEFPPRGIEP 596
ED LA + G+D AR R + R + AGL RR DE P I P
Sbjct: 11 EDARLAAYKPGVDVARSRRRREDRLLAVRRSNRDAGLFKRRRDEPTPTPIPP 62
>01_01_0267 + 2201404-2202501
Length = 365
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +2
Query: 314 GVRSPKKMYLTTQPSAQWARSAKFTSRTGRSDTGASAR--AERSHTRRYSPRR 466
G+R + M QP+ WAR F SD G R + H ++ P R
Sbjct: 159 GLRRGRGMGARAQPTPSWAREPLFEKAVTPSDVGKLNRLVVPKQHAEKHFPLR 211
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 343 YDPAVGPMGAISKVHKSDRKIGHRRVGEGGEITYKKIQSSQIMGS 477
Y GP G+ S +++ +GH V E G I+Y +I + GS
Sbjct: 450 YTETPGPGGSYSA---AEQNLGHLSVSEAGSISYNEISAVNEAGS 491
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 292 AEDDDRDRSSIAEKNVPYDPAVGPMGA 372
AE+DDR ++ E +V Y P + P GA
Sbjct: 136 AEEDDRAKNPKPEDSVYYHPTLNPSGA 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,987,823
Number of Sequences: 37544
Number of extensions: 487690
Number of successful extensions: 1536
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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